HL_9TV2_019

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CC(PSU)CAG

Length

6 nucleotides

Bulged bases

9TV2|1|L5|C|1672, 9TV2|1|L5|A|1675

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_019 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.0679

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9TV2|1|L5|C|1671
9TV2|1|L5|C|1672
9TV2|1|L5|PSU|1673
9TV2|1|L5|C|1674
9TV2|1|L5|A|1675
9TV2|1|L5|G|1676

Current chains

Chain L5

28S rRNA

Nearby chains

Chain La

Large ribosomal subunit protein uL15

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L36a