HL_9TV2_032
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 9TV2|1|L5|C|2784, 9TV2|1|L5|G|2786, 9TV2|1|L5|A|2788
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TV2_032 not in the Motif Atlas
- Homologous match to HL_8GLP_045
- Geometric discrepancy: 0.0306
- The information below is about HL_8GLP_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.5
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9TV2|1|L5|C|2782
9TV2|1|L5|G|2783
9TV2|1|L5|C|2784
9TV2|1|L5|A|2785
9TV2|1|L5|G|2786
9TV2|1|L5|C|2787
9TV2|1|L5|A|2788
9TV2|1|L5|G|2789
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- Large ribosomal subunit protein eL37
- Chain Ll
- 60S ribosomal protein L39
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