HL_9TV2_045
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UUCAG(OMU)ACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TV2_045 not in the Motif Atlas
- Homologous match to HL_8GLP_063
- Geometric discrepancy: 0.034
- The information below is about HL_8GLP_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_15296.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9TV2|1|L5|U|4287
9TV2|1|L5|U|4288
9TV2|1|L5|C|4289
9TV2|1|L5|A|4290
9TV2|1|L5|G|4291
9TV2|1|L5|OMU|4292
9TV2|1|L5|A|4293
9TV2|1|L5|C|4294
9TV2|1|L5|G|4295
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lo
- 60S ribosomal protein L36a
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