HL_9TV2_047
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 9TV2|1|L5|U|4340
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TV2_047 not in the Motif Atlas
- Homologous match to HL_8GLP_065
- Geometric discrepancy: 0.2586
- The information below is about HL_8GLP_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14856.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9TV2|1|L5|U|4338
9TV2|1|L5|PSU|4339
9TV2|1|L5|U|4340
9TV2|1|L5|G|4341
9TV2|1|L5|G|4342
9TV2|1|L5|G|4343
9TV2|1|L5|U|4344
9TV2|1|L5|U|4345
9TV2|1|L5|U|4346
9TV2|1|L5|PSU|4347
9TV2|1|L5|A|4348
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain La
- Large ribosomal subunit protein uL15
- Chain Li
- 60S ribosomal protein L36
- Chain Lo
- 60S ribosomal protein L36a
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