HL_9TV2_048

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9TV2|1|L5|G|4461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TV2_048 not in the Motif Atlas

Homologous match to HL_8GLP_067

Geometric discrepancy: 0.0635

The information below is about HL_8GLP_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9TV2|1|L5|A|4460
9TV2|1|L5|G|4461
9TV2|1|L5|C|4462
9TV2|1|L5|A|4463
9TV2|1|L5|G|4464
9TV2|1|L5|A|4465
9TV2|1|L5|A|4466
9TV2|1|L5|U|4467

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-60S ribosomal protein L40