HL_9TV2_081
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- AUUGCAAUUAU(PSU)
- Length
- 12 nucleotides
- Bulged bases
- 9TV2|1|S2|U|1621, 9TV2|1|S2|U|1622, 9TV2|1|S2|A|1623
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|S2|A|1614
9TV2|1|S2|U|1615
9TV2|1|S2|U|1616
9TV2|1|S2|G|1617
9TV2|1|S2|C|1618
9TV2|1|S2|A|1619
9TV2|1|S2|A|1620
9TV2|1|S2|U|1621
9TV2|1|S2|U|1622
9TV2|1|S2|A|1623
9TV2|1|S2|U|1624
9TV2|1|S2|PSU|1625
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SP
- 40S ribosomal protein S15
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- Small ribosomal subunit protein eS19
- Chain Sd
- 40S ribosomal protein S29
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