HL_9TZ5_010

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

9TZ5|1|a|U|325, 9TZ5|1|a|A|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_010 not in the Motif Atlas

Geometric match to HL_9H3G_010

Geometric discrepancy: 0.047

The information below is about HL_9H3G_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9TZ5|1|a|C|323
9TZ5|1|a|A|324
9TZ5|1|a|U|325
9TZ5|1|a|A|326
9TZ5|1|a|G|327

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24

Chain w

Large ribosomal subunit protein uL4