9TZ5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9TZ5_001 | 1/a/67:76 | Pseudoknot with intercalation | homologous HL_7A0S_001 HL_17803.2 | |
| HL_9TZ5_002 | 1/a/95:104 | No text annotation | ||
| HL_9TZ5_003 | 1/a/131:136 | No text annotation | homologous HL_7A0S_003 HL_82710.3 | |
| HL_9TZ5_004 | 1/a/142:149 | No text annotation | geometric HL_9E6Q_025 HL_46211.1 | |
| HL_9TZ5_005 | 1/a/162:172 | No text annotation | ||
| HL_9TZ5_006 | 1/a/198:205 | No text annotation | homologous HL_7A0S_006 HL_48677.2 | |
| HL_9TZ5_007 | 1/a/229:234 | No text annotation | geometric HL_8B0X_039 HL_63151.1 | |
| HL_9TZ5_008 | 1/a/250:256 | No text annotation | homologous HL_7A0S_008 HL_76371.3 | |
| HL_9TZ5_009 | 1/a/309:316 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.4 | |
| HL_9TZ5_010 | 1/a/323:327 | No text annotation | geometric HL_9H3G_010 HL_75660.9 | |
| HL_9TZ5_011 | 1/a/331:339 | T-loop with unstacked turn | homologous HL_7A0S_012 HL_27670.5 | |
| HL_9TZ5_012 | 1/a/387:397 | No text annotation | homologous HL_7A0S_013 HL_91503.8 | |
| HL_9TZ5_013 | 1/a/415:422 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.5 | |
| HL_9TZ5_014 | 1/a/467:472 | GNRA | homologous HL_7A0S_015 HL_34789.5 | |
| HL_9TZ5_015 | 1/a/492:498 | GNRA | homologous HL_7A0S_016 HL_34789.5 | |
| HL_9TZ5_017 | 1/a/573:582 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_33597.5 | |
| HL_9TZ5_018 | 1/a/618:624 | No text annotation | geometric HL_9E6Q_019 HL_42293.1 | |
| HL_9TZ5_019 | 1/a/636:641 | GNRA | homologous HL_7A0S_020 HL_34789.5 | |
| HL_9TZ5_020 | 1/a/648:654 | GNRA | geometric HL_9DFE_019 HL_34789.5 | |
| HL_9TZ5_022 | 1/a/751:760 | No text annotation | homologous HL_7A0S_022 HL_50204.2 | |
| HL_9TZ5_023 | 1/a/786:792 | No text annotation | geometric HL_8B0X_054 HL_79773.1 | |
| HL_9TZ5_024 | 1/a/833:838 | No text annotation | homologous HL_7A0S_024 HL_27530.2 | |
| HL_9TZ5_026 | 1/a/961:968 | GNRA | homologous HL_7A0S_026 HL_34789.5 | |
| HL_9TZ5_027 | 1/a/984:991 | No text annotation | homologous HL_7A0S_027 HL_47171.2 | |
| HL_9TZ5_029 | 1/a/1232:1237 | GNRA | homologous HL_7A0S_031 HL_34789.5 | |
| HL_9TZ5_030 | 1/a/1291:1299 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_032 HL_33597.5 | |
| HL_9TZ5_031 | 1/a/1334:1340 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
| HL_9TZ5_032 | 1/a/1373:1378 | GNRA variation | homologous HL_7A0S_034 HL_34789.5 | |
| HL_9TZ5_033 | 1/a/1399:1408 | No text annotation | homologous HL_7A0S_035 HL_77449.2 | |
| HL_9TZ5_034 | 1/a/1461:1469 | No text annotation | geometric HL_8B0X_064 HL_00557.1 | |
| HL_9TZ5_035 | 1/a/1502:1508 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
| HL_9TZ5_036 | 1/a/1544:1552 | No text annotation | ||
| HL_9TZ5_037 | 1/a/1580:1583 | Mini UNCG | homologous HL_7A0S_039 HL_90436.4 | |
| HL_9TZ5_038 | 1/a/1627:1634 | No text annotation | homologous HL_7A0S_040 HL_28592.3 | |
| HL_9TZ5_039 | 1/a/1645:1651 | No text annotation | geometric HL_8B0X_069 HL_34789.5 | |
| HL_9TZ5_040 | 1/a/1706:1711 | UNCG | homologous HL_7A0S_042 HL_61337.5 | |
| HL_9TZ5_041 | 1/a/1742:1745 | No text annotation | geometric HL_8OI5_012 HL_97696.1 | |
| HL_9TZ5_042 | 1/a/1766:1770 | No text annotation | homologous HL_7A0S_044 HL_80709.5 | |
| HL_9TZ5_043 | 1/a/1791:1801 | No text annotation | geometric HL_8B0X_073 HL_87681.2 | |
| HL_9TZ5_044 | 1/a/1820:1825 | No text annotation | geometric HL_9H3G_098 HL_34789.5 | |
| HL_9TZ5_045 | 1/a/1883:1888 | No text annotation | ||
| HL_9TZ5_047 | 1/a/1965:1973 | No text annotation | homologous HL_7A0S_048 HL_33350.1 | |
| HL_9TZ5_048 | 1/a/2043:2052 | No text annotation | homologous HL_7A0S_049 HL_78372.2 | |
| HL_9TZ5_050 | 1/a/2225:2231 | No text annotation | geometric HL_8B0X_079 HL_42293.1 | |
| HL_9TZ5_051 | 1/a/2264:2272 | LSU P loop | homologous HL_7A0S_052 HL_11974.3 | |
| HL_9TZ5_052 | 1/a/2280:2292 | No text annotation | homologous HL_7A0S_053 HL_02042.2 | |
| HL_9TZ5_053 | 1/a/2319:2329 | No text annotation | ||
| HL_9TZ5_054 | 1/a/2340:2347 | Pseudoknot geometry | homologous HL_7A0S_055 HL_52651.3 | |
| HL_9TZ5_055 | 1/a/2371:2378 | GNRA with extra cWW | homologous HL_7A0S_056 HL_87268.3 | |
| HL_9TZ5_056 | 1/a/2390:2395 | GNRA | homologous HL_7A0S_057 HL_34789.5 | |
| HL_9TZ5_057 | 1/a/2420:2429 | No text annotation | homologous HL_7A0S_058 HL_51853.2 | |
| HL_9TZ5_058 | 1/a/2487:2495 | No text annotation | homologous HL_7A0S_059 HL_52011.2 | |
| HL_9TZ5_059 | 1/a/2544:2551 | GNRA variation | homologous HL_7A0S_060 HL_46665.3 | |
| HL_9TZ5_060 | 1/a/2567:2573 | LSU A loop | homologous HL_7A0S_061 HL_48677.2 | |
| HL_9TZ5_061 | 1/a/2610:2615 | GNRA | homologous HL_7A0S_062 HL_34789.5 | |
| HL_9TZ5_062 | 1/a/2674:2679 | GNRA | homologous HL_7A0S_063 HL_34789.5 | |
| HL_9TZ5_063 | 1/a/2717:2722 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.3 | |
| HL_9TZ5_064 | 1/a/2761:2775 | No text annotation | homologous HL_7A0S_065 HL_53269.3 | |
| HL_9TZ5_065 | 1/a/2810:2816 | UNCG variation | geometric HL_7A0S_023 HL_91813.1 | |
| HL_9TZ5_066 | 1/a/2834:2842 | No text annotation | homologous HL_7A0S_067 HL_37889.2 | |
| HL_9TZ5_067 | 1/a/2871:2876 | GNRA | homologous HL_7A0S_068 HL_34789.5 | |
| HL_9TZ5_068 | 1/b/38:44 | No text annotation | homologous HL_4V9F_071 HL_59381.3 | |
| HL_9TZ5_069 | 1/b/85:89 | Mini UNCG with extended bulge | geometric HL_7A0S_017 HL_90436.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9TZ5_016 | Mini UNCG with extended bulge | ||
| HL_9TZ5_021 | No text annotation | ||
| HL_9TZ5_025 | No text annotation | ||
| HL_9TZ5_028 | No text annotation | ||
| HL_9TZ5_046 | No text annotation | ||
| HL_9TZ5_049 | UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9TZ5_001 | 1/a/32:38, 1/a/515:521 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_22311.2 | |
| IL_9TZ5_002 | 1/a/44:45, 1/a/447:449 | Single bulged A | homologous IL_7A0S_002 IL_14190.3 | |
| IL_9TZ5_003 | 1/a/51:52, 1/a/439:441 | Minor groove platform | homologous IL_7A0S_003 IL_34520.4 | |
| IL_9TZ5_004 | 1/a/89:93, 1/a/106:113 | Kink-turn | geometric IL_9DFE_004 IL_71972.2 | |
| IL_9TZ5_005 | 1/a/187:188, 1/a/216:218 | Single stack bend | homologous IL_7A0S_005 IL_15011.4 | |
| IL_9TZ5_006 | 1/a/192:198, 1/a/205:212 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_006 IL_62167.4 | |
| IL_9TZ5_007 | 1/a/243:249, 1/a/257:262 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_8B0X_071 IL_02666.2 | |
| IL_9TZ5_008 | 1/a/273:275, 1/a/371:375 | No text annotation | ||
| IL_9TZ5_009 | 1/a/280:285, 1/a/363:366 | No text annotation | ||
| IL_9TZ5_010 | 1/a/297:299, 1/a/347:351 | No text annotation | geometric IL_8B0X_074 IL_76658.1 | |
| IL_9TZ5_011 | 1/a/306:309, 1/a/316:319 | Tandem non-canonical cWW pairs | geometric IL_8FER_001 IL_71194.3 | |
| IL_9TZ5_012 | 1/a/486:489, 1/a/501:514 | No text annotation | geometric IL_8B0X_075 IL_44923.2 | |
| IL_9TZ5_013 | 1/a/541:544, 1/a/561:564 | No text annotation | geometric IL_8B0X_076 IL_58355.3 | |
| IL_9TZ5_014 | 1/a/571:573, 1/a/582:584 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_71625.4 | |
| IL_9TZ5_015 | 1/a/613:617, 1/a/625:629 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
| IL_9TZ5_016 | 1/a/679:681, 1/a/813:815 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.5 | |
| IL_9TZ5_017 | 1/a/681:685, 1/a/806:813 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_73855.2 | |
| IL_9TZ5_018 | 1/a/704:705, 1/a/770:772 | Single bulged A | homologous IL_7A0S_016 IL_14190.3 | |
| IL_9TZ5_019 | 1/a/709:710, 1/a/735:737 | Single bulged G | homologous IL_7A0S_017 IL_28408.3 | |
| IL_9TZ5_020 | 1/a/710:714, 1/a/731:735 | No text annotation | geometric IL_9AXU_029 IL_15190.3 | |
| IL_9TZ5_021 | 1/a/745:747, 1/a/764:765 | Major groove platform | geometric IL_4WF9_026 IL_48076.9 | |
| IL_9TZ5_022 | 1/a/782:785, 1/a/793:798 | No text annotation | ||
| IL_9TZ5_023 | 1/a/851:854, 1/a/936:940 | No text annotation | ||
| IL_9TZ5_024 | 1/a/856:857, 1/a/932:934 | No text annotation | geometric IL_8B0X_089 IL_15011.4 | |
| IL_9TZ5_025 | 1/a/862:868, 1/a/921:927 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_8B0X_090 IL_94128.2 | |
| IL_9TZ5_026 | 1/a/868:869, 1/a/919:921 | Minor groove platform | homologous IL_7A0S_028 IL_34520.4 | |
| IL_9TZ5_027 | 1/a/870:874, 1/a/915:918 | C-loop | homologous IL_7A0S_029 IL_16301.2 | |
| IL_9TZ5_029 | 1/a/881:888, 1/a/900:908 | No text annotation | ||
| IL_9TZ5_030 | 1/a/1000:1002, 1/a/1166:1167 | Single bulged C | homologous IL_7A0S_032 IL_05642.4 | |
| IL_9TZ5_031 | 1/a/1004:1008, 1/a/1160:1164 | UAA/GAN | homologous IL_7A0S_033 IL_08938.2 | |
| IL_9TZ5_032 | 1/a/1010:1017, 1/a/1157:1158 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_46868.1 | |
| IL_9TZ5_033 | 1/a/1017:1019, 1/a/1156:1157 | Single bulged U | homologous IL_7A0S_035 IL_97561.6 | |
| IL_9TZ5_034 | 1/a/1024:1030, 1/a/1146:1151 | Kink-turn related | homologous IL_7A0S_036 IL_57188.6 | |
| IL_9TZ5_035 | 1/a/1030:1036, 1/a/1130:1146 | No text annotation | homologous IL_7A0S_037 IL_50715.4 | |
| IL_9TZ5_036 | 1/a/1037:1039, 1/a/1128:1129 | Single stack bend | geometric IL_8P9A_238 IL_15011.4 | |
| IL_9TZ5_037 | 1/a/1045:1047, 1/a/1120:1122 | No text annotation | geometric IL_8GLP_025 IL_01003.5 | |
| IL_9TZ5_038 | 1/a/1206:1208, 1/a/1257:1260 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.6 | |
| IL_9TZ5_039 | 1/a/1212:1216, 1/a/1250:1253 | No text annotation | ||
| IL_9TZ5_040 | 1/a/1218:1225, 1/a/1244:1248 | Kink-turn | homologous IL_7A0S_043 IL_90775.2 | |
| IL_9TZ5_041 | 1/a/1272:1279, 1/a/2027:2033 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_045 IL_62167.4 | |
| IL_9TZ5_042 | 1/a/1320:1323, 1/a/1618:1619 | No text annotation | geometric IL_9H3G_197 IL_74641.3 | |
| IL_9TZ5_043 | 1/a/1329:1333, 1/a/1341:1343 | C-loop | homologous IL_7A0S_047 IL_06671.2 | |
| IL_9TZ5_044 | 1/a/1361:1365, 1/a/1386:1390 | UAA/GAN | homologous IL_7A0S_048 IL_89021.4 | |
| IL_9TZ5_045 | 1/a/1367:1371, 1/a/1380:1384 | tSH-tWH-tHS | homologous IL_7A0S_049 IL_05821.2 | |
| IL_9TZ5_046 | 1/a/1425:1426, 1/a/1597:1602 | No text annotation | ||
| IL_9TZ5_047 | 1/a/1427:1431, 1/a/1592:1596 | UAA/GAN | homologous IL_7A0S_051 IL_08938.2 | |
| IL_9TZ5_048 | 1/a/1442:1445, 1/a/1572:1576 | No text annotation | geometric IL_8B0X_115 IL_28284.1 | |
| IL_9TZ5_049 | 1/a/1447:1450, 1/a/1566:1570 | tSH-tHW | homologous IL_7A0S_053 IL_74317.1 | |
| IL_9TZ5_050 | 1/a/1460:1461, 1/a/1469:1471 | No text annotation | geometric IL_8B0X_117 IL_97561.6 | |
| IL_9TZ5_051 | 1/a/1478:1481, 1/a/1530:1534 | No text annotation | geometric IL_8B0X_118 IL_68574.5 | |
| IL_9TZ5_052 | 1/a/1483:1488, 1/a/1523:1528 | No text annotation | ||
| IL_9TZ5_053 | 1/a/1491:1492, 1/a/1517:1520 | No text annotation | geometric IL_8B0X_120 IL_52564.1 | |
| IL_9TZ5_054 | 1/a/1499:1501, 1/a/1509:1510 | Single bulged U | geometric IL_8P9A_358 IL_97561.6 | |
| IL_9TZ5_055 | 1/a/1536:1540, 1/a/1557:1561 | UAA/GAN with extra stack | geometric IL_4WF9_073 IL_89021.4 | |
| IL_9TZ5_057 | 1/a/1666:1671, 1/a/2020:2022 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_9TZ5_058 | 1/a/1678:1680, 1/a/2011:2013 | Isolated tWW turn | homologous IL_7A0S_060 IL_10432.2 | |
| IL_9TZ5_059 | 1/a/1681:1684, 1/a/2009:2010 | No text annotation | geometric IL_8B0X_125 IL_74641.3 | |
| IL_9TZ5_060 | 1/a/1681:1689, 1/a/2006:2010 | No text annotation | geometric IL_8B0X_180 IL_80252.2 | |
| IL_9TZ5_061 | 1/a/1684:1689, 1/a/2006:2009 | Intercalated tWH | homologous IL_7A0S_062 IL_28217.2 | |
| IL_9TZ5_062 | 1/a/1701:1706, 1/a/1711:1717 | tSH-tSH-tHH-tHS | homologous IL_7A0S_063 IL_20700.2 | |
| IL_9TZ5_063 | 1/a/1727:1732, 1/a/1756:1760 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_82100.1 | |
| IL_9TZ5_064 | 1/a/1734:1738, 1/a/1750:1754 | No text annotation | geometric IL_8B0X_129 IL_70744.1 | |
| IL_9TZ5_065 | 1/a/1741:1742, 1/a/1745:1747 | No text annotation | geometric IL_8B0X_130 IL_05642.4 | |
| IL_9TZ5_066 | 1/a/1784:1785, 1/a/1996:1998 | Single bulged A | homologous IL_7A0S_064 IL_14190.3 | |
| IL_9TZ5_067 | 1/a/1812:1818, 1/a/1827:1835 | Kink-turn related | homologous IL_7A0S_065 IL_17069.6 | |
| IL_9TZ5_068 | 1/a/1851:1854, 1/a/1918:1919 | Minor groove platform, major groove intercalation | homologous IL_7A0S_066 IL_55206.2 | |
| IL_9TZ5_069 | 1/a/1855:1856, 1/a/1914:1917 | Major groove intercalation | homologous IL_7A0S_067 IL_77710.2 | |
| IL_9TZ5_070 | 1/a/1860:1863, 1/a/1909:1910 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_73108.3 | |
| IL_9TZ5_071 | 1/a/1865:1869, 1/a/1903:1907 | UAA/GAN with extra stack | homologous IL_7A0S_069 IL_89021.4 | |
| IL_9TZ5_072 | 1/a/1869:1874, 1/a/1898:1903 | No text annotation | geometric IL_8P9A_410 IL_57885.3 | |
| IL_9TZ5_073 | 1/a/1878:1881, 1/a/1890:1894 | No text annotation | geometric IL_8B0X_136 IL_77691.7 | |
| IL_9TZ5_074 | 1/a/1949:1950, 1/a/1980:1983 | No text annotation | geometric IL_8B0X_137 IL_24886.3 | |
| IL_9TZ5_075 | 1/a/1950:1962, 1/a/1976:1980 | No text annotation | ||
| IL_9TZ5_076 | 1/a/2066:2068, 1/a/2633:2634 | Major groove platform | homologous IL_7A0S_073 IL_48076.9 | |
| IL_9TZ5_077 | 1/a/2070:2072, 1/a/2628:2631 | No text annotation | geometric IL_8B0X_140 IL_80025.2 | |
| IL_9TZ5_078 | 1/a/2083:2085, 1/a/2458:2459 | Single bulged U | homologous IL_7A0S_075 IL_97561.6 | |
| IL_9TZ5_079 | 1/a/2086:2087, 1/a/2454:2457 | Minor groove platform | homologous IL_7A0S_076 IL_34520.4 | |
| IL_9TZ5_080 | 1/a/2097:2099, 1/a/2252:2255 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.3 | |
| IL_9TZ5_081 | 1/a/2101:2103, 1/a/2248:2250 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_71625.4 | |
| IL_9TZ5_086 | 1/a/2218:2220, 1/a/2236:2237 | Single bulged U | geometric IL_4O26_001 IL_97561.6 | |
| IL_9TZ5_087 | 1/a/2220:2222, 1/a/2234:2236 | No text annotation | geometric IL_5ZEG_001 IL_71625.4 | |
| IL_9TZ5_088 | 1/a/2307:2309, 1/a/2355:2357 | No text annotation | geometric IL_8GLP_245 IL_10892.3 | |
| IL_9TZ5_089 | 1/a/2313:2315, 1/a/2333:2337 | No text annotation | geometric IL_8B0X_147 IL_14250.2 | |
| IL_9TZ5_090 | 1/a/2366:2369, 1/a/2380:2383 | Double sheared | homologous IL_7A0S_081 IL_58355.3 | |
| IL_9TZ5_091 | 1/a/2417:2419, 1/a/2430:2431 | Major groove platform | homologous IL_7A0S_082 IL_48076.9 | |
| IL_9TZ5_092 | 1/a/2469:2470, 1/a/2514:2516 | Single stack bend | homologous IL_7A0S_083 IL_15011.4 | |
| IL_9TZ5_093 | 1/a/2470:2471, 1/a/2512:2514 | Major groove platform | homologous IL_7A0S_084 IL_48076.9 | |
| IL_9TZ5_094 | 1/a/2473:2475, 1/a/2509:2510 | Major groove platform | homologous IL_7A0S_085 IL_48076.9 | |
| IL_9TZ5_095 | 1/a/2475:2477, 1/a/2505:2509 | Major groove minor groove platform with extra cWW | homologous IL_7A0S_086 IL_36931.3 | |
| IL_9TZ5_096 | 1/a/2482:2486, 1/a/2496:2500 | Double sheared with non-canonical cWW | homologous IL_7A0S_087 IL_87767.3 | |
| IL_9TZ5_097 | 1/a/2523:2524, 1/a/2596:2598 | Major groove platform | homologous IL_7A0S_088 IL_46637.3 | |
| IL_9TZ5_098 | 1/a/2526:2528, 1/a/2590:2594 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_68118.5 | |
| IL_9TZ5_099 | 1/a/2528:2529, 1/a/2587:2590 | Multiple bulged bases | homologous IL_7A0S_090 IL_44609.3 | |
| IL_9TZ5_100 | 1/a/2537:2539, 1/a/2556:2560 | No text annotation | geometric IL_7EL1_001 IL_70784.2 | |
| IL_9TZ5_102 | 1/a/2607:2608, 1/a/2617:2619 | No text annotation | geometric IL_8GLP_154 IL_14190.3 | |
| IL_9TZ5_103 | 1/a/2652:2656, 1/a/2790:2798 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.4 | |
| IL_9TZ5_104 | 1/a/2668:2674, 1/a/2679:2684 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
| IL_9TZ5_105 | 1/a/2696:2700, 1/a/2741:2743 | C-loop | homologous IL_7A0S_095 IL_63596.13 | |
| IL_9TZ5_106 | 1/a/2703:2707, 1/a/2734:2738 | UAA/GAN related, with intercalation | homologous IL_7A0S_096 IL_82016.1 | |
| IL_9TZ5_107 | 1/a/2711:2712, 1/a/2727:2730 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.3 | |
| IL_9TZ5_108 | 1/a/2753:2758, 1/a/2778:2783 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_9TZ5_109 | 1/a/2821:2826, 1/a/2904:2907 | No text annotation | ||
| IL_9TZ5_110 | 1/a/2853:2854, 1/a/2893:2895 | Major groove intercalation | homologous IL_7A0S_099 IL_28408.3 | |
| IL_9TZ5_111 | 1/a/2858:2861, 1/a/2885:2889 | No text annotation | geometric IL_8B0X_169 IL_60988.3 | |
| IL_9TZ5_112 | 1/a/2862:2867, 1/a/2880:2884 | No text annotation | homologous IL_7A0S_101 IL_48489.2 | |
| IL_9TZ5_113 | 1/b/17:18, 1/b/65:67 | Major groove intercalation | homologous IL_4V9F_101 IL_14190.3 | |
| IL_9TZ5_114 | 1/b/22:28, 1/b/56:61 | No text annotation | ||
| IL_9TZ5_115 | 1/b/30:31, 1/b/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.3 | |
| IL_9TZ5_116 | 1/b/34:38, 1/b/44:48 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.13 | |
| IL_9TZ5_117 | 1/b/71:79, 1/b/95:103 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9TZ5_028 | Isolated non-canonical cWW pair | ||
| IL_9TZ5_056 | Stack outside cWW | ||
| IL_9TZ5_082 | Isolated non-canonical cWW pair | ||
| IL_9TZ5_083 | No text annotation | ||
| IL_9TZ5_084 | No text annotation | ||
| IL_9TZ5_085 | Kink-turn | ||
| IL_9TZ5_101 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9TZ5_001 | 1/a/38:39, 1/a/479:486, 1/a/514:515 | No text annotation | geometric J3_8B0X_014 J3_68715.2 | |
| J3_9TZ5_002 | 1/a/38:39, 1/a/479:489, 1/a/501:515 | No text annotation | homologous J3_7A0S_015 J3_17917.2 | |
| J3_9TZ5_003 | 1/a/40:43, 1/a/450:466, 1/a/473:478 | No text annotation | homologous J3_7A0S_016 J3_07616.2 | |
| J3_9TZ5_004 | 1/a/64:65, 1/a/78:84, 1/a/118:122 | No text annotation | homologous J3_7A0S_002 J3_01004.2 | |
| J3_9TZ5_005 | 1/a/300:305, 1/a/320:329, 1/a/341:346 | No text annotation | ||
| J3_9TZ5_006 | 1/a/690:696, 1/a/780:782, 1/a/798:801 | No text annotation | geometric J3_7A0S_004 J3_46658.2 | |
| J3_9TZ5_007 | 1/a/690:696, 1/a/780:785, 1/a/793:801 | No text annotation | ||
| J3_9TZ5_008 | 1/a/705:707, 1/a/739:743, 1/a/767:770 | No text annotation | homologous J3_7A0S_005 J3_69816.2 | |
| J3_9TZ5_009 | 1/a/1308:1313, 1/a/1640:1642, 1/a/1654:1657 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_9TZ5_010 | 1/a/1316:1319, 1/a/1620:1626, 1/a/1635:1637 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_9TZ5_011 | 1/a/1354:1359, 1/a/1392:1395, 1/a/1412:1413 | No text annotation | ||
| J3_9TZ5_012 | 1/a/1434:1439, 1/a/1579:1580, 1/a/1583:1589 | No text annotation | homologous J3_7A0S_019 J3_34864.3 | |
| J3_9TZ5_013 | 1/a/2107:2109, 1/a/2212:2216, 1/a/2239:2244 | No text annotation | homologous J3_7A0S_009 J3_17460.1 | |
| J3_9TZ5_014 | 1/a/2298:2300, 1/a/2400:2411, 1/a/2437:2443 | No text annotation | homologous J3_7A0S_020 J3_04772.2 | |
| J3_9TZ5_015 | 1/a/2311:2313, 1/a/2337:2339, 1/a/2348:2353 | No text annotation | geometric J3_8B0X_022 J3_05327.2 | |
| J3_9TZ5_016 | 1/a/2311:2315, 1/a/2333:2339, 1/a/2348:2353 | No text annotation | ||
| J3_9TZ5_017 | 1/a/2533:2536, 1/a/2561:2563, 1/a/2577:2583 | No text annotation | homologous J3_7A0S_011 J3_32601.6 | |
| J3_9TZ5_018 | 1/a/2805:2806, 1/a/2820:2821, 1/a/2907:2909 | No text annotation | ||
| J3_9TZ5_019 | 1/a/2829:2830, 1/a/2846:2851, 1/a/2897:2901 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
| J3_9TZ5_020 | 1/b/10:16, 1/b/68:69, 1/b/105:108 | No text annotation | homologous J3_7A0S_021 J3_47324.1 | |
| J4_9TZ5_001 | 1/a/272:273, 1/a/375:380, 1/a/404:411, 1/a/426:429 | No text annotation | homologous J4_7A0S_001 J4_94698.2 | |
| J4_9TZ5_002 | 1/a/300:305, 1/a/320:323, 1/a/327:329, 1/a/341:346 | No text annotation | ||
| J4_9TZ5_003 | 1/a/608:611, 1/a/631:635, 1/a/642:645, 1/a/657:663 | No text annotation | ||
| J4_9TZ5_004 | 1/a/1280:1286, 1/a/1304:1305, 1/a/1660:1663, 1/a/2025:2026 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
| J4_9TZ5_005 | 1/a/1320:1324, 1/a/1348:1353, 1/a/1414:1415, 1/a/1612:1619 | No text annotation | ||
| J4_9TZ5_006 | 1/a/1323:1324, 1/a/1348:1353, 1/a/1414:1415, 1/a/1612:1618 | No text annotation | homologous J4_7A0S_006 J4_48150.2 | |
| J4_9TZ5_007 | 1/a/1454:1455, 1/a/1476:1477, 1/a/1535:1536, 1/a/1561:1562 | No text annotation | ||
| J4_9TZ5_008 | 1/a/1786:1790, 1/a/1802:1806, 1/a/1841:1844, 1/a/1991:1995 | No text annotation | homologous J4_7A0S_008 J4_61477.6 | |
| J4_9TZ5_009 | 1/a/1847:1849, 1/a/1921:1922, 1/a/1940:1949, 1/a/1983:1988 | No text annotation | ||
| J4_9TZ5_010 | 1/a/2301:2305, 1/a/2359:2363, 1/a/2386:2388, 1/a/2397:2399 | No text annotation | homologous J4_7A0S_009 J4_98139.1 | |
| J4_9TZ5_011 | 1/a/2659:2662, 1/a/2690:2692, 1/a/2747:2751, 1/a/2785:2787 | No text annotation | ||
| J5_9TZ5_001 | 1/a/55:62, 1/a/124:129, 1/a/138:139, 1/a/152:154, 1/a/180:182 | No text annotation | ||
| J5_9TZ5_002 | 1/a/536:538, 1/a/567:571, 1/a/584:586, 1/a/1271:1272, 1/a/2033:2034 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_9TZ5_003 | 1/a/591:596, 1/a/675:678, 1/a/816:819, 1/a/1205:1206, 1/a/1260:1266 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_9TZ5_004 | 1/a/1689:1697, 1/a/1721:1722, 1/a/1765:1766, 1/a/1770:1778, 1/a/2004:2006 | No text annotation | homologous J5_7A0S_005 J5_99177.2 | |
| J5_9TZ5_005 | 1/a/2073:2080, 1/a/2462:2469, 1/a/2516:2523, 1/a/2598:2604, 1/a/2622:2627 | No text annotation | ||
| J5_9TZ5_006 | 1/a/2090:2093, 1/a/2259:2262, 1/a/2274:2275, 1/a/2297:2298, 1/a/2443:2451 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_9TZ5_001 | 1/a/53:54, 1/a/183:187, 1/a/218:228, 1/a/235:240, 1/a/265:270, 1/a/431:438 | No text annotation | ||
| J6_9TZ5_002 | 1/a/2090:2093, 1/a/2259:2262, 1/a/2274:2275, 1/a/2297:2300, 1/a/2400:2411, 1/a/2437:2451 | No text annotation | ||
| J7_9TZ5_001 | 1/a/16:23, 1/a/530:536, 1/a/2034:2039, 1/a/2056:2059, 1/a/2641:2646, 1/a/2804:2805, 1/a/2909:2910 | No text annotation | ||
| J7_9TZ5_002 | 1/a/824:829, 1/a/842:845, 1/a/946:952, 1/a/977:982, 1/a/993:997, 1/a/1170:1171, 1/a/1195:1200 | No text annotation |
Problematic loops
No problematic loops
Coloring options: