HL_9TZ5_012

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9TZ5|1|a|G|391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3575

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9TZ5|1|a|A|387
9TZ5|1|a|C|388
9TZ5|1|a|A|389
9TZ5|1|a|C|390
9TZ5|1|a|G|391
9TZ5|1|a|U|392
9TZ5|1|a|G|393
9TZ5|1|a|G|394
9TZ5|1|a|U|395
9TZ5|1|a|A|396
9TZ5|1|a|U|397

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 9

Large ribosomal subunit protein bL28