HL_9TZ5_016

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UUCG

Length

4 nucleotides

Bulged bases

9TZ5|1|a|U|552

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_016 not in the Motif Atlas

Homologous match to HL_7A0S_017

Geometric discrepancy: 0.5542

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

9TZ5|1|a|U|551
9TZ5|1|a|U|552
9TZ5|1|a|C|553
9TZ5|1|a|G|554

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain h

Large ribosomal subunit protein bL21