HL_9TZ5_020

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

9TZ5|1|a|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_020 not in the Motif Atlas

Geometric match to HL_9DFE_019

Geometric discrepancy: 0.1988

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9TZ5|1|a|C|648
9TZ5|1|a|G|649
9TZ5|1|a|A|650
9TZ5|1|a|A|651
9TZ5|1|a|A|652
9TZ5|1|a|U|653
9TZ5|1|a|G|654

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL33

Chain z

Large ribosomal subunit protein bL35