HL_9TZ5_033

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9TZ5|1|a|U|1406, 9TZ5|1|a|U|1407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_033 not in the Motif Atlas

Homologous match to HL_7A0S_035

Geometric discrepancy: 0.351

The information below is about HL_7A0S_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TZ5|1|a|G|1399
9TZ5|1|a|U|1400
9TZ5|1|a|U|1401
9TZ5|1|a|A|1402
9TZ5|1|a|A|1403
9TZ5|1|a|U|1404
9TZ5|1|a|A|1405
9TZ5|1|a|U|1406
9TZ5|1|a|U|1407
9TZ5|1|a|C|1408

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL23