HL_9TZ5_038

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9TZ5|1|a|A|1629, 9TZ5|1|a|A|1631, 9TZ5|1|a|A|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_038 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.0861

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9TZ5|1|a|C|1627
9TZ5|1|a|G|1628
9TZ5|1|a|A|1629
9TZ5|1|a|C|1630
9TZ5|1|a|A|1631
9TZ5|1|a|C|1632
9TZ5|1|a|A|1633
9TZ5|1|a|G|1634

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain j

Large ribosomal subunit protein uL22

Chain y

Large ribosomal subunit protein bL34