HL_9TZ5_039

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

9TZ5|1|a|A|1649

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_039 not in the Motif Atlas

Geometric match to HL_8B0X_069

Geometric discrepancy: 0.074

The information below is about HL_8B0X_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

9TZ5|1|a|A|1645
9TZ5|1|a|G|1646
9TZ5|1|a|A|1647
9TZ5|1|a|G|1648
9TZ5|1|a|A|1649
9TZ5|1|a|A|1650
9TZ5|1|a|U|1651

Current chains

Chain a

23S ribosomal RNA

Nearby chains