HL_9TZ5_046

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

G(PSU)AACUA(PSU)AAC

Length

11 nucleotides

Bulged bases

9TZ5|1|a|A|1929

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_046 not in the Motif Atlas

Geometric match to HL_9H3G_052

Geometric discrepancy: 0.1152

The information below is about HL_9H3G_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.2

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9TZ5|1|a|G|1926
9TZ5|1|a|PSU|1927
9TZ5|1|a|A|1928
9TZ5|1|a|A|1929
9TZ5|1|a|C|1930
9TZ5|1|a|U|1931
9TZ5|1|a|A|1932
9TZ5|1|a|PSU|1933
9TZ5|1|a|A|1934
9TZ5|1|a|A|1935
9TZ5|1|a|C|1936

Current chains

Chain a

23S ribosomal RNA

Nearby chains