HL_9TZ5_048
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 9TZ5|1|a|A|2046, 9TZ5|1|a|A|2047, 9TZ5|1|a|G|2048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TZ5_048 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.2261
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9TZ5|1|a|G|2043
9TZ5|1|a|U|2044
9TZ5|1|a|G|2045
9TZ5|1|a|A|2046
9TZ5|1|a|A|2047
9TZ5|1|a|G|2048
9TZ5|1|a|A|2049
9TZ5|1|a|U|2050
9TZ5|1|a|G|2051
9TZ5|1|a|C|2052
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain Z
- Coxiellacae Large Subunit Peptide (CLaSP)
- Chain d
- Large ribosomal subunit protein uL3
- Chain h
- Large ribosomal subunit protein bL21
- Chain v
- Large ribosomal subunit protein bL32
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