HL_9TZ5_055

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUGACAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_055 not in the Motif Atlas

Homologous match to HL_7A0S_056

Geometric discrepancy: 0.2587

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9TZ5|1|a|C|2371
9TZ5|1|a|U|2372
9TZ5|1|a|G|2373
9TZ5|1|a|A|2374
9TZ5|1|a|C|2375
9TZ5|1|a|A|2376
9TZ5|1|a|A|2377
9TZ5|1|a|G|2378

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL27

Chain k

Large ribosomal subunit protein uL15

Chain z

Large ribosomal subunit protein bL35