HL_9TZ5_063

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_063 not in the Motif Atlas

Homologous match to HL_7A0S_064

Geometric discrepancy: 0.1423

The information below is about HL_7A0S_064

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_12125.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9TZ5|1|a|C|2717
9TZ5|1|a|G|2718
9TZ5|1|a|C|2719
9TZ5|1|a|C|2720
9TZ5|1|a|A|2721
9TZ5|1|a|G|2722

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17