HL_9TZ5_065

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9TZ5|1|a|U|2812, 9TZ5|1|a|A|2815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ5_065 not in the Motif Atlas

Geometric match to HL_7A0S_023

Geometric discrepancy: 0.3201

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

9TZ5|1|a|C|2810
9TZ5|1|a|U|2811
9TZ5|1|a|U|2812
9TZ5|1|a|U|2813
9TZ5|1|a|A|2814
9TZ5|1|a|A|2815
9TZ5|1|a|G|2816

Current chains

Chain a

23S ribosomal RNA

Nearby chains