HL_9TZ5_069
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GUCUC
- Length
- 5 nucleotides
- Bulged bases
- 9TZ5|1|b|U|86, 9TZ5|1|b|U|88
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9TZ5_069 not in the Motif Atlas
- Geometric match to HL_7A0S_017
- Geometric discrepancy: 0.1465
- The information below is about HL_7A0S_017
- Detailed Annotation
- Mini UNCG with extended bulge
- Broad Annotation
- Mini UNCG with extended bulge
- Motif group
- HL_90436.4
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 48
Unit IDs
9TZ5|1|b|G|85
9TZ5|1|b|U|86
9TZ5|1|b|C|87
9TZ5|1|b|U|88
9TZ5|1|b|C|89
Current chains
- Chain b
- 5S ribosomal RNA
Nearby chains
- Chain Z
- Coxiellacae Large Subunit Peptide (CLaSP)
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain s
- Large ribosomal subunit protein uL16
- Chain t
- Large ribosomal subunit protein uL30
- Chain u
- Large ribosomal subunit protein bL25
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