HL_9TZ9_009

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9TZ9|1|a|A|315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ9_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3599

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9TZ9|1|a|C|309
9TZ9|1|a|U|310
9TZ9|1|a|G|311
9TZ9|1|a|G|312
9TZ9|1|a|A|313
9TZ9|1|a|A|314
9TZ9|1|a|A|315
9TZ9|1|a|G|316

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein uL24