HL_9TZ9_060

3D structure

PDB id

9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Empty 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZ9_060 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1896

The information below is about HL_7A0S_061

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9TZ9|1|a|C|2567
9TZ9|1|a|OMU|2568
9TZ9|1|a|G|2569
9TZ9|1|a|U|2570
9TZ9|1|a|U|2571
9TZ9|1|a|C|2572
9TZ9|1|a|G|2573

Current chains

Chain a

23S ribosomal RNA

Nearby chains