HL_9TZE_012

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUAAUAUC

Length

9 nucleotides

Bulged bases

9TZE|1|A|U|464

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_012 not in the Motif Atlas

Geometric match to HL_9DE7_001

Geometric discrepancy: 0.2892

The information below is about HL_9DE7_001

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9TZE|1|A|G|459
9TZE|1|A|G|460
9TZE|1|A|U|461
9TZE|1|A|A|462
9TZE|1|A|A|463
9TZE|1|A|U|464
9TZE|1|A|A|465
9TZE|1|A|U|466
9TZE|1|A|C|467

Current chains

Chain A

16S ribosomal RNA

Nearby chains