HL_9TZE_025

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

9TZE|1|A|G|1090

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_025 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.1883

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9TZE|1|A|G|1085
9TZE|1|A|U|1086
9TZE|1|A|U|1087
9TZE|1|A|A|1088
9TZE|1|A|A|1089
9TZE|1|A|G|1090
9TZE|1|A|U|1091
9TZE|1|A|C|1092

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 9

Ribosome hibernation promoting factor

Chain G

Small ribosomal subunit protein uS7