HL_9TZE_050

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGUCUAG

Length

7 nucleotides

Bulged bases

9TZE|1|a|U|620, 9TZE|1|a|U|622

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_050 not in the Motif Atlas

Geometric match to HL_9E6Q_019

Geometric discrepancy: 0.2277

The information below is about HL_9E6Q_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9TZE|1|a|C|618
9TZE|1|a|G|619
9TZE|1|a|U|620
9TZE|1|a|C|621
9TZE|1|a|U|622
9TZE|1|a|A|623
9TZE|1|a|G|624

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain w

Large ribosomal subunit protein uL4