HL_9TZE_066

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CGAUGGUUG

Length

9 nucleotides

Bulged bases

9TZE|1|a|A|1463, 9TZE|1|a|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_066 not in the Motif Atlas

Geometric match to HL_8B0X_064

Geometric discrepancy: 0.0817

The information below is about HL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00557.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9TZE|1|a|C|1461
9TZE|1|a|G|1462
9TZE|1|a|A|1463
9TZE|1|a|U|1464
9TZE|1|a|G|1465
9TZE|1|a|G|1466
9TZE|1|a|U|1467
9TZE|1|a|U|1468
9TZE|1|a|G|1469

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain m

Large ribosomal subunit protein bL17