HL_9TZE_082

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

9TZE|1|a|A|2227, 9TZE|1|a|U|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_082 not in the Motif Atlas

Geometric match to HL_8B0X_079

Geometric discrepancy: 0.0844

The information below is about HL_8B0X_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

9TZE|1|a|G|2225
9TZE|1|a|U|2226
9TZE|1|a|A|2227
9TZE|1|a|A|2228
9TZE|1|a|U|2229
9TZE|1|a|C|2230
9TZE|1|a|C|2231

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 6

Large ribosomal subunit protein bL28

Chain o

Large ribosomal subunit protein uL2