HL_9TZE_089

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UUUAUGGAAG

Length

10 nucleotides

Bulged bases

9TZE|1|a|U|2422

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_089 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.175

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9TZE|1|a|U|2420
9TZE|1|a|U|2421
9TZE|1|a|U|2422
9TZE|1|a|A|2423
9TZE|1|a|U|2424
9TZE|1|a|G|2425
9TZE|1|a|G|2426
9TZE|1|a|A|2427
9TZE|1|a|A|2428
9TZE|1|a|G|2429

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15