HL_9TZE_090

3D structure

PDB id

9TZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Coxiella burnetii Ribosome with Doxycycline and HPFcold

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

9TZE|1|a|U|2489

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9TZE_090 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2303

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9TZE|1|a|A|2487
9TZE|1|a|G|2488
9TZE|1|a|U|2489
9TZE|1|a|U|2490
9TZE|1|a|C|2491
9TZE|1|a|A|2492
9TZE|1|a|U|2493
9TZE|1|a|A|2494
9TZE|1|a|U|2495

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain s

Large ribosomal subunit protein uL16