HL_9UWH_040

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACCACG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UWH_040 not in the Motif Atlas

Geometric match to HL_6MWN_004

Geometric discrepancy: 0.3696

The information below is about HL_6MWN_004

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9UWH|1|AA|C|734
9UWH|1|AA|A|735
9UWH|1|AA|C|736
9UWH|1|AA|C|737
9UWH|1|AA|A|738
9UWH|1|AA|C|739
9UWH|1|AA|G|740

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A0

Small ribosomal subunit protein mS34

Chain AM

Small ribosomal subunit protein bS16m

Chain AU

Small ribosomal subunit protein mS26