HL_9UWH_059

3D structure

PDB id

9UWH (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosome trapped by retapamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCC(RSQ)AUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: RSQ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UWH_059 not in the Motif Atlas

Geometric match to HL_8B0X_031

Geometric discrepancy: 0.111

The information below is about HL_8B0X_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

9UWH|1|Ax|G|31
9UWH|1|Ax|C|32
9UWH|1|Ax|C|33
9UWH|1|Ax|RSQ|34
9UWH|1|Ax|A|35
9UWH|1|Ax|U|36
9UWH|1|Ax|A|37
9UWH|1|Ax|C|38
9UWH|1|Ax|C|39

Current chains

Chain Ax

P/P-tRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AG

Small ribosomal subunit protein uS9m

Chain Az

mRNA