HL_9UZK_008

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

9UZK|1|2|C|407

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZK_008 not in the Motif Atlas

Homologous match to HL_9PN5_085

Geometric discrepancy: 0.2089

The information below is about HL_9PN5_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9UZK|1|2|U|406
9UZK|1|2|C|407
9UZK|1|2|A|408
9UZK|1|2|G|409
9UZK|1|2|G|410
9UZK|1|2|G|411

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5

Chain L

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS17

Chain Y

Small ribosomal subunit protein uS8

Chain Z

Small ribosomal subunit protein uS12