RNA 3D Hub //

9UZK Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9UZK_0011/2/7:17No text annotation
homologous
HL_9PN5_077
HL_73535.4
HL_9UZK_0091/2/431:442No text annotation
homologous
HL_9PN5_086
HL_86432.4
HL_9UZK_0151/2/816:824No text annotation
homologous
HL_9PN5_092
HL_11974.5
HL_9UZK_0201/2/1050:1060No text annotation
homologous
HL_9H3G_095
HL_38491.5
HL_9UZK_0241/2/1241:1250No text annotation
homologous
HL_9PN5_101
HL_97521.4
HL_9UZK_0261/2/1349:1354No text annotation
homologous
HL_9H3G_101
HL_34789.7
HL_9UZK_0271/2/1362:1369No text annotation
homologous
HL_9H3G_102
HL_63894.5
HL_9UZK_0291/2/1456:1462No text annotation
geometric
HL_8GLP_113
HL_76371.5
HL_9UZK_0321/2/1653:1661No text annotation
homologous
HL_9PN5_109
HL_25307.3

Problematic loops

#loop idProblemSequence
HL_9UZK_002No text annotation
HL_9UZK_003No text annotation
HL_9UZK_004No text annotation
HL_9UZK_005No text annotation
HL_9UZK_006No text annotation
HL_9UZK_007No text annotation
HL_9UZK_008No text annotation
HL_9UZK_010No text annotation
HL_9UZK_011No text annotation
HL_9UZK_012GNRA
HL_9UZK_013No text annotation
HL_9UZK_014No text annotation
HL_9UZK_016No text annotation
HL_9UZK_017No text annotation
HL_9UZK_018No text annotation
HL_9UZK_019No text annotation
HL_9UZK_021No text annotation
HL_9UZK_022No text annotation
HL_9UZK_023No text annotation
HL_9UZK_025No text annotation
HL_9UZK_028No text annotation
HL_9UZK_030No text annotation
HL_9UZK_031No text annotation
HL_9UZK_033No text annotation
HL_9UZK_034No text annotation
HL_9UZK_035tRNA anticodon loop
HL_9UZK_036No text annotation
HL_9UZK_037GNRA
HL_9UZK_038No text annotation
HL_9UZK_039No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9UZK_0031/2/37:40,
1/2/504:508		Double sheared
geometric
IL_8GLP_190
IL_58355.5
IL_9UZK_0041/2/41:47,
1/2/469:471		No text annotation
homologous
IL_9PN5_145
IL_88082.5
IL_9UZK_0081/2/108:112,
1/2/339:343		No text annotation
geometric
IL_9JA9_001
IL_71154.6
IL_9UZK_0091/2/112:115,
1/2/338:339		No text annotation
homologous
IL_9H3G_163
IL_71421.6
IL_9UZK_0151/2/213:216,
1/2/293:300		No text annotation
IL_9UZK_0181/2/349:354,
1/2/386:393		Kink-turn with non-sequential stacking
homologous
IL_9PN5_159
IL_46174.7
IL_9UZK_0191/2/356:361,
1/2/383:384		No text annotation
geometric
IL_5Y58_001
IL_37738.1
IL_9UZK_0201/2/401:403,
1/2/414:419		No text annotation
homologous
IL_9PN5_161
IL_93336.4
IL_9UZK_0291/2/553:555,
1/2/575:582		No text annotation
IL_9UZK_0311/2/589:596,
1/2/626:627		No text annotation
homologous
IL_9H3G_185
IL_11411.4
IL_9UZK_0331/2/601:607,
1/2/614:622		Kink-turn related
homologous
IL_9PN5_173
IL_52042.4
IL_9UZK_0351/2/663:665,
1/2/1026:1028		Isolated non-canonical cWW pair
homologous
IL_9PN5_175
IL_01003.7
IL_9UZK_0361/2/666:671,
1/2/1020:1025		No text annotation
IL_9UZK_0391/2/801:803,
1/2/852:854		Isolated non-canonical cWW pair
homologous
IL_9PN5_179
IL_71625.6
IL_9UZK_0401/2/803:812,
1/2/844:852		No text annotation
homologous
IL_9H3G_194
IL_59049.5
IL_9UZK_0461/2/927:931,
1/2/1003:1006		Tandem non-canonical cWW pairs
homologous
IL_9PN5_185
IL_15225.5
IL_9UZK_0481/2/948:952,
1/2/963:970		Kink-turn
homologous
IL_9H3G_202
IL_71972.2
IL_9UZK_0491/2/1038:1043,
1/2/1067:1069		No text annotation
homologous
IL_9H3G_203
IL_31690.2
IL_9UZK_0511/2/1087:1089,
1/2/1148:1154		No text annotation
homologous
IL_9H3G_205
IL_82706.5
IL_9UZK_0521/2/1094:1097,
1/2/1127:1130		Tandem non-canonical cWW pairs
homologous
IL_9PN5_192
IL_15225.5
IL_9UZK_0551/2/1164:1171,
1/2/1182:1187		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_9PN5_194
IL_84044.4
IL_9UZK_0561/2/1199:1200,
1/2/1689:1691		Single bulged A
homologous
IL_9PN5_195
IL_14190.5
IL_9UZK_0571/2/1202:1204,
1/2/1686:1687		Single bulged G
homologous
IL_9PN5_196
IL_28408.5
IL_9UZK_0601/2/1231:1232,
1/2/1516:1518		Minor groove platform
homologous
IL_9H3G_214
IL_37129.1
IL_9UZK_0661/2/1321:1323,
1/2/1498:1499		Single bulged U
homologous
IL_9H3G_218
IL_97561.8
IL_9UZK_0681/2/1333:1334,
1/2/1484:1486		Single bulged A
homologous
IL_9H3G_222
IL_14190.5
IL_9UZK_0691/2/1343:1345,
1/2/1376:1378		Isolated cWH basepair
homologous
IL_9H3G_223
IL_10892.5
IL_9UZK_0701/2/1359:1361,
1/2/1370:1371		Minor groove platform
homologous
IL_9H3G_224
IL_37129.1
IL_9UZK_0761/2/1449:1452,
1/2/1466:1471		No text annotation
IL_9UZK_0781/2/1536:1545,
1/2/1577:1587		No text annotation
IL_9UZK_0791/2/1545:1553,
1/2/1572:1577		No text annotation
IL_9UZK_0821/2/1695:1697,
1/2/1827:1830		No text annotation
homologous
IL_9H3G_233
IL_18228.4
IL_9UZK_0861/2/1709:1711,
1/2/1811:1813		Isolated non-canonical cWW pair
homologous
IL_9PN5_224
IL_01003.7

Problematic loops

#loop idProblemSequence
IL_9UZK_001Isolated non-canonical cWW pair
IL_9UZK_002Isolated non-canonical cWW pair
IL_9UZK_005Minor groove platform
IL_9UZK_006No text annotation
IL_9UZK_007No text annotation
IL_9UZK_010No text annotation
IL_9UZK_011No text annotation
IL_9UZK_012Isolated cWH basepair
IL_9UZK_013No text annotation
IL_9UZK_014Isolated non-canonical cWW pair
IL_9UZK_016Single bulged A
IL_9UZK_017Isolated non-canonical cWW pair
IL_9UZK_021Isolated cWH basepair
IL_9UZK_022Isolated non-canonical cWW pair
IL_9UZK_023Single bulged U
IL_9UZK_024No text annotation
IL_9UZK_025Single bulged G
IL_9UZK_026No text annotation
IL_9UZK_027No text annotation
IL_9UZK_028Isolated non-canonical cWW pair
IL_9UZK_030Tandem non-canonical cWW pairs
IL_9UZK_032Single bulged U
IL_9UZK_034Isolated non-canonical cWW pair
IL_9UZK_037Decoding loop related
IL_9UZK_038No text annotation
IL_9UZK_041No text annotation
IL_9UZK_042No text annotation
IL_9UZK_043Major groove platform; stack outside cWW
IL_9UZK_044Isolated non-canonical cWW pair
IL_9UZK_045Tandem non-canonical cWW pairs
IL_9UZK_047Isolated non-canonical cWW pair
IL_9UZK_050No text annotation
IL_9UZK_053Isolated non-canonical cWW pair
IL_9UZK_054Minor groove platform
IL_9UZK_058No text annotation
IL_9UZK_059Isolated non-canonical cWW pair
IL_9UZK_061Intercalated cWW
IL_9UZK_062No text annotation
IL_9UZK_063No text annotation
IL_9UZK_064No text annotation
IL_9UZK_065No text annotation
IL_9UZK_067No text annotation
IL_9UZK_071No text annotation
IL_9UZK_072No text annotation
IL_9UZK_073No text annotation
IL_9UZK_074No text annotation
IL_9UZK_075Stack outside cWW
IL_9UZK_077Isolated non-canonical cWW pair
IL_9UZK_080No text annotation
IL_9UZK_081No text annotation
IL_9UZK_083No text annotation
IL_9UZK_084Isolated non-canonical cWW pair
IL_9UZK_085No text annotation
IL_9UZK_087Double sheared
IL_9UZK_088No text annotation
IL_9UZK_089No text annotation
IL_9UZK_090Double sheared
IL_9UZK_091Isolated non-canonical cWW pair
IL_9UZK_092No text annotation
IL_9UZK_093Major groove platform
IL_9UZK_094Single stack bend
IL_9UZK_095Single stack bend
IL_9UZK_096No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9UZK_0031/2/672:675,
1/2/913:918,
1/2/1018:1019		No text annotation
J3_9UZK_0041/2/672:675,
1/2/913:919,
1/2/1015:1019		No text annotation
J3_9UZK_0061/2/934:937,
1/2/981:989,
1/2/996:1000		No text annotation
homologous
J3_9PN5_033
NA
J3_9UZK_0071/2/1090:1092,
1/2/1132:1136,
1/2/1143:1147		No text annotation
homologous
J3_9H3G_034
NA
J3_9UZK_0081/2/1214:1217,
1/2/1640:1646,
1/2/1668:1675		No text annotation
homologous
J3_9PN5_035
J3_85722.4
J3_9UZK_0101/2/1233:1241,
1/2/1250:1262,
1/2/1511:1515		No text annotation
J3_9UZK_0121/2/1336:1341,
1/2/1380:1385,
1/2/1477:1482		No text annotation
homologous
J3_9H3G_039
NA
J3_9UZK_0131/2/1346:1347,
1/2/1356:1359,
1/2/1371:1375		No text annotation
homologous
J3_9PN5_040
J3_76043.7
J3_9UZK_0141/2/1387:1391,
1/2/1446:1449,
1/2/1471:1475		No text annotation
J3_9UZK_0151/2/1387:1391,
1/2/1446:1452,
1/2/1466:1475		No text annotation
J3_9UZK_0161/2/1527:1531,
1/2/1592:1599,
1/2/1630:1633		No text annotation
homologous
J3_9PN5_043
J3_03192.4
J4_9UZK_0011/2/98:106,
1/2/345:347,
1/2/395:399,
1/2/421:422		No text annotation
homologous
J4_9PN5_010
J4_15241.5
J4_9UZK_0021/2/655:663,
1/2/1028:1033,
1/2/1074:1085,
1/2/1156:1158		No text annotation
J5_9UZK_0011/2/30:34,
1/2/511:517,
1/2/548:553,
1/2/582:585,
1/2/631:634		No text annotation
homologous
J5_9PN5_007
J5_04786.3
J5_9UZK_0021/2/30:34,
1/2/511:517,
1/2/548:555,
1/2/575:585,
1/2/631:634		No text annotation
J5_9UZK_0031/2/53:56,
1/2/89:96,
1/2/424:426,
1/2/447:449,
1/2/460:464		No text annotation
homologous
J5_9PN5_009
J5_58574.4

Problematic loops

#loop idProblemSequence
J3_9UZK_001No text annotation
J3_9UZK_002No text annotation
J3_9UZK_005No text annotation
J3_9UZK_009No text annotation
J3_9UZK_011No text annotation
J4_9UZK_003No text annotation
J4_9UZK_004No text annotation

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