HL_9UZK_017

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZK|1|2|U|881
9UZK|1|2|A|882
9UZK|1|2|U|883
9UZK|1|2|U|884
9UZK|1|2|U|885
9UZK|1|2|U|886
9UZK|1|2|G|887
9UZK|1|2|U|888
9UZK|1|2|U|889
9UZK|1|2|G|890
9UZK|1|2|G|891
9UZK|1|2|U|892
9UZK|1|2|U|893
9UZK|1|2|U|894
9UZK|1|2|U|895
9UZK|1|2|C|896
9UZK|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS6

Chain N

Small ribosomal subunit protein uS17