HL_9UZK_027

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9UZK|1|2|U|1367

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZK_027 not in the Motif Atlas

Homologous match to HL_9H3G_102

Geometric discrepancy: 0.2695

The information below is about HL_9H3G_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9UZK|1|2|G|1362
9UZK|1|2|U|1363
9UZK|1|2|U|1364
9UZK|1|2|A|1365
9UZK|1|2|A|1366
9UZK|1|2|U|1367
9UZK|1|2|U|1368
9UZK|1|2|C|1369

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Small ribosomal subunit protein uS3

Chain T

Small ribosomal subunit protein eS17