HL_9UZK_035
3D structure
- PDB id
- 9UZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S with initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 9UZK|1|y|C|32
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9UZK_035 not in the Motif Atlas
- Homologous match to HL_7VNV_002
- Geometric discrepancy: 0.2313
- The information below is about HL_7VNV_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9UZK|1|y|G|30
9UZK|1|y|C|31
9UZK|1|y|C|32
9UZK|1|y|C|33
9UZK|1|y|A|34
9UZK|1|y|U|35
9UZK|1|y|A|36
9UZK|1|y|A|37
9UZK|1|y|C|38
Current chains
- Chain y
- Initiator tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain R
- Small ribosomal subunit protein uS19
- Chain S
- Small ribosomal subunit protein uS9
- Chain z
- EMCV IRES
Coloring options: