HL_9UZK_039

3D structure

PDB id

9UZK (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S with initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

AUAAGAU

Length

7 nucleotides

Bulged bases

9UZK|1|z|G|585

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZK_039 not in the Motif Atlas

Geometric match to HL_9H3G_060

Geometric discrepancy: 0.32

The information below is about HL_9H3G_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9UZK|1|z|A|581
9UZK|1|z|U|582
9UZK|1|z|A|583
9UZK|1|z|A|584
9UZK|1|z|G|585
9UZK|1|z|A|586
9UZK|1|z|U|587

Current chains

Chain z

EMCV IRES

Nearby chains

Chain R

Small ribosomal subunit protein uS19