HL_9UZL_017

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|U|881
9UZL|1|2|A|882
9UZL|1|2|U|883
9UZL|1|2|U|884
9UZL|1|2|U|885
9UZL|1|2|U|886
9UZL|1|2|G|887
9UZL|1|2|U|888
9UZL|1|2|U|889
9UZL|1|2|G|890
9UZL|1|2|G|891
9UZL|1|2|U|892
9UZL|1|2|U|893
9UZL|1|2|U|894
9UZL|1|2|U|895
9UZL|1|2|C|896
9UZL|1|2|G|897

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein eS6

Chain N

Small ribosomal subunit protein uS17