RNA 3D Hub //

9UZL Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9UZL_0091/2/431:442No text annotation
homologous
HL_9PN5_086
HL_86432.3
HL_9UZL_0111/2/488:494No text annotation
homologous
HL_9PN5_088
HL_25795.1
HL_9UZL_0201/2/1050:1060No text annotation
homologous
HL_9H3G_095
HL_38491.4
HL_9UZL_0241/2/1241:1250No text annotation
homologous
HL_9PN5_101
HL_97521.3
HL_9UZL_0261/2/1349:1354No text annotation
homologous
HL_9H3G_101
HL_34789.6
HL_9UZL_0321/2/1653:1661No text annotation
homologous
HL_9PN5_109
HL_25307.2

Problematic loops

#loop idProblemSequence
HL_9UZL_001No text annotation
HL_9UZL_002No text annotation
HL_9UZL_003No text annotation
HL_9UZL_004No text annotation
HL_9UZL_005No text annotation
HL_9UZL_006No text annotation
HL_9UZL_007No text annotation
HL_9UZL_008No text annotation
HL_9UZL_010No text annotation
HL_9UZL_012No text annotation
HL_9UZL_013No text annotation
HL_9UZL_014No text annotation
HL_9UZL_015No text annotation
HL_9UZL_016No text annotation
HL_9UZL_017No text annotation
HL_9UZL_018No text annotation
HL_9UZL_019No text annotation
HL_9UZL_021No text annotation
HL_9UZL_022No text annotation
HL_9UZL_023No text annotation
HL_9UZL_025No text annotation
HL_9UZL_027No text annotation
HL_9UZL_028No text annotation
HL_9UZL_029No text annotation
HL_9UZL_030No text annotation
HL_9UZL_031No text annotation
HL_9UZL_033No text annotation
HL_9UZL_034No text annotation
HL_9UZL_035tRNA anticodon loop
HL_9UZL_036No text annotation
HL_9UZL_037GNRA
HL_9UZL_038No text annotation
HL_9UZL_039No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9UZL_0201/2/401:403,
1/2/414:419		No text annotation
homologous
IL_9PN5_161
IL_93336.3
IL_9UZL_0311/2/589:596,
1/2/626:627		No text annotation
homologous
IL_9H3G_185
IL_11411.3
IL_9UZL_0361/2/666:670,
1/2/1021:1025		No text annotation
homologous
IL_9PN5_176
IL_05821.3
IL_9UZL_0401/2/803:812,
1/2/844:852		No text annotation
IL_9UZL_0511/2/1087:1089,
1/2/1148:1154		No text annotation
homologous
IL_9H3G_205
IL_82706.4
IL_9UZL_0561/2/1199:1200,
1/2/1689:1691		Single bulged A
homologous
IL_9H3G_210
IL_14190.4
IL_9UZL_0581/2/1210:1213,
1/2/1676:1680		No text annotation
homologous
IL_9PN5_197
IL_63596.14
IL_9UZL_0601/2/1231:1232,
1/2/1516:1518		Minor groove platform
homologous
IL_9PN5_199
IL_98469.1
IL_9UZL_0781/2/1449:1452,
1/2/1466:1471		No text annotation
IL_9UZL_0801/2/1536:1545,
1/2/1577:1587		No text annotation

Problematic loops

#loop idProblemSequence
IL_9UZL_001Isolated non-canonical cWW pair
IL_9UZL_002Isolated non-canonical cWW pair
IL_9UZL_003Double sheared
IL_9UZL_004No text annotation
IL_9UZL_005Minor groove platform
IL_9UZL_006No text annotation
IL_9UZL_007No text annotation
IL_9UZL_008No text annotation
IL_9UZL_009No text annotation
IL_9UZL_010No text annotation
IL_9UZL_011No text annotation
IL_9UZL_012Isolated cWH basepair
IL_9UZL_013No text annotation
IL_9UZL_014Isolated non-canonical cWW pair
IL_9UZL_015No text annotation
IL_9UZL_016Single bulged A
IL_9UZL_017Isolated non-canonical cWW pair
IL_9UZL_018Kink-turn with non-sequential stacking
IL_9UZL_019No text annotation
IL_9UZL_021Isolated cWH basepair
IL_9UZL_022Isolated non-canonical cWW pair
IL_9UZL_023Single bulged U
IL_9UZL_024No text annotation
IL_9UZL_025Single bulged G
IL_9UZL_026No text annotation
IL_9UZL_027No text annotation
IL_9UZL_028Isolated non-canonical cWW pair
IL_9UZL_029No text annotation
IL_9UZL_030Tandem non-canonical cWW pairs
IL_9UZL_032Single bulged U
IL_9UZL_033Kink-turn related
IL_9UZL_034Isolated non-canonical cWW pair
IL_9UZL_035Isolated non-canonical cWW pair
IL_9UZL_037No text annotation
IL_9UZL_038No text annotation
IL_9UZL_039Isolated non-canonical cWW pair
IL_9UZL_041No text annotation
IL_9UZL_042No text annotation
IL_9UZL_043Major groove platform; stack outside cWW
IL_9UZL_044Isolated non-canonical cWW pair
IL_9UZL_045Tandem non-canonical cWW pairs
IL_9UZL_046Tandem non-canonical cWW pairs
IL_9UZL_047Tandem non-canonical cWW pairs
IL_9UZL_048Kink-turn
IL_9UZL_049No text annotation
IL_9UZL_050No text annotation
IL_9UZL_052Tandem non-canonical cWW pairs
IL_9UZL_053Isolated non-canonical cWW pair
IL_9UZL_054Minor groove platform
IL_9UZL_0558x6 Sarcin-Ricin with inserted Y; G-bulge
IL_9UZL_057Single bulged G
IL_9UZL_059Isolated non-canonical cWW pair
IL_9UZL_061Intercalated cWW
IL_9UZL_062No text annotation
IL_9UZL_063No text annotation
IL_9UZL_064No text annotation
IL_9UZL_065No text annotation
IL_9UZL_066Single bulged U
IL_9UZL_067No text annotation
IL_9UZL_068No text annotation
IL_9UZL_069Minor groove platform
IL_9UZL_070Single bulged A
IL_9UZL_071Isolated cWH basepair
IL_9UZL_072Minor groove platform
IL_9UZL_073No text annotation
IL_9UZL_074No text annotation
IL_9UZL_075No text annotation
IL_9UZL_076No text annotation
IL_9UZL_077Stack outside cWW
IL_9UZL_079Isolated non-canonical cWW pair
IL_9UZL_081No text annotation
IL_9UZL_082No text annotation
IL_9UZL_083No text annotation
IL_9UZL_084No text annotation
IL_9UZL_085No text annotation
IL_9UZL_086Isolated non-canonical cWW pair
IL_9UZL_087No text annotation
IL_9UZL_088Isolated non-canonical cWW pair
IL_9UZL_089Double sheared
IL_9UZL_090No text annotation
IL_9UZL_091No text annotation
IL_9UZL_092Double sheared
IL_9UZL_093Isolated non-canonical cWW pair
IL_9UZL_094No text annotation
IL_9UZL_095Major groove platform
IL_9UZL_096Single stack bend
IL_9UZL_097Single stack bend
IL_9UZL_098No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9UZL_0061/2/934:937,
1/2/981:989,
1/2/996:1000		No text annotation
homologous
J3_9H3G_033
NA
J3_9UZL_0151/2/1387:1391,
1/2/1446:1452,
1/2/1466:1475		No text annotation
J3_9UZL_0161/2/1527:1531,
1/2/1592:1599,
1/2/1630:1633		No text annotation
homologous
J3_9PN5_043
J3_03192.3
J4_9UZL_0021/2/655:663,
1/2/1028:1033,
1/2/1074:1085,
1/2/1156:1158		No text annotation
J5_9UZL_0031/2/53:56,
1/2/89:96,
1/2/424:426,
1/2/447:449,
1/2/460:464		No text annotation
homologous
J5_9PN5_009
J5_58574.3

Problematic loops

#loop idProblemSequence
J3_9UZL_001No text annotation
J3_9UZL_002No text annotation
J3_9UZL_003No text annotation
J3_9UZL_004No text annotation
J3_9UZL_005No text annotation
J3_9UZL_007No text annotation
J3_9UZL_008No text annotation
J3_9UZL_009No text annotation
J3_9UZL_010No text annotation
J3_9UZL_011No text annotation
J3_9UZL_012No text annotation
J3_9UZL_013No text annotation
J3_9UZL_014No text annotation
J4_9UZL_001No text annotation
J4_9UZL_003No text annotation
J4_9UZL_004No text annotation
J5_9UZL_001No text annotation
J5_9UZL_002No text annotation
J5_9UZL_004No text annotation

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