HL_9UZL_035
3D structure
- PDB id
- 9UZL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.01 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 9UZL|1|y|C|32
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9UZL_035 not in the Motif Atlas
- Homologous match to HL_7VNV_002
- Geometric discrepancy: 0.2353
- The information below is about HL_7VNV_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 44
Unit IDs
9UZL|1|y|G|30
9UZL|1|y|C|31
9UZL|1|y|C|32
9UZL|1|y|C|33
9UZL|1|y|A|34
9UZL|1|y|U|35
9UZL|1|y|A|36
9UZL|1|y|A|37
9UZL|1|y|C|38
Current chains
- Chain y
- Initiator tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A
- Eukaryotic translation initiation factor 2 subunit 1
- Chain R
- Small ribosomal subunit protein uS19
- Chain S
- Small ribosomal subunit protein uS9
- Chain z
- Encephalomyocarditis viral IRES
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