HL_9UZL_037

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZL_037 not in the Motif Atlas

Geometric match to HL_4WF9_059

Geometric discrepancy: 0.2596

The information below is about HL_4WF9_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

434

Unit IDs

9UZL|1|z|G|546
9UZL|1|z|G|547
9UZL|1|z|C|548
9UZL|1|z|G|549
9UZL|1|z|A|550
9UZL|1|z|C|551

Current chains

Chain z

Encephalomyocarditis viral IRES

Nearby chains

Chain y

Transfer RNA; tRNA