HL_9UZL_038

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CCAAAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9UZL_038 not in the Motif Atlas

Geometric match to HL_8OI5_058

Geometric discrepancy: 0.3304

The information below is about HL_8OI5_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9UZL|1|z|C|566
9UZL|1|z|C|567
9UZL|1|z|A|568
9UZL|1|z|A|569
9UZL|1|z|A|570
9UZL|1|z|A|571
9UZL|1|z|G|572

Current chains

Chain z

Encephalomyocarditis viral IRES

Nearby chains

Chain R

Small ribosomal subunit protein uS19

Chain U

Small ribosomal subunit protein uS13