HL_9VMA_016

3D structure

PDB id

9VMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

a protein complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UCAUA

Length

5 nucleotides

Bulged bases

9VMA|1|L|C|9, 9VMA|1|L|U|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VMA_016 not in the Motif Atlas

Geometric match to HL_7QQP_002

Geometric discrepancy: 0.0814

The information below is about HL_7QQP_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

9VMA|1|L|U|8
9VMA|1|L|C|9
9VMA|1|L|A|10
9VMA|1|L|U|11
9VMA|1|L|A|12

Current chains

Chain L

RNA (188-MER)

Nearby chains

Chain F

RNA-dependent DNA polymerase