9VMA Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9VMA_001 | 1/G/8:12 | Mini UNCG | geometric HL_7QQP_002 HL_90436.1 | |
| HL_9VMA_004 | 1/H/8:12 | Mini UNCG | geometric HL_7QQP_002 HL_90436.1 | |
| HL_9VMA_006 | 1/H/91:98 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9VMA_007 | 1/I/8:12 | Mini UNCG | geometric HL_7QQP_002 HL_90436.1 | |
| HL_9VMA_009 | 1/I/91:98 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9VMA_010 | 1/J/8:12 | Mini UNCG | geometric HL_7QQP_002 HL_90436.1 | |
| HL_9VMA_012 | 1/J/91:98 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9VMA_015 | 1/K/91:98 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 | |
| HL_9VMA_016 | 1/L/8:12 | Mini UNCG | geometric HL_7QQP_002 HL_90436.1 | |
| HL_9VMA_018 | 1/L/91:98 | GNRA wlth tandem sheared | geometric HL_3HHN_010 HL_68642.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9VMA_002 | No text annotation | ||
| HL_9VMA_003 | GNRA wlth tandem sheared | ||
| HL_9VMA_005 | No text annotation | ||
| HL_9VMA_008 | No text annotation | ||
| HL_9VMA_011 | No text annotation | ||
| HL_9VMA_013 | Mini UNCG | ||
| HL_9VMA_014 | No text annotation | ||
| HL_9VMA_017 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9VMA_001 | 1/G/21:26, 1/G/136:141 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9VMA_005 | 1/I/21:26, 1/I/136:141 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9VMA_009 | 1/K/21:26, 1/K/136:141 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 | |
| IL_9VMA_011 | 1/L/21:26, 1/L/136:141 | Tandem non-canonical cWW pairs with near WC pairs | geometric IL_4EYA_005 IL_82292.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9VMA_002 | No text annotation | ||
| IL_9VMA_003 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_9VMA_004 | No text annotation | ||
| IL_9VMA_006 | No text annotation | ||
| IL_9VMA_007 | Tandem non-canonical cWW pairs with near WC pairs | ||
| IL_9VMA_008 | Single stack bend | ||
| IL_9VMA_010 | No text annotation | ||
| IL_9VMA_012 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J4_9VMA_001 | 1/G/30:34, 1/G/53:56, 1/G/79:84, 1/G/105:132 | No text annotation |
Problematic loops
No problematic loops
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