HL_9VTH_004
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_004 not in the Motif Atlas
- Geometric match to HL_3IGI_001
- Geometric discrepancy: 0.1243
- The information below is about HL_3IGI_001
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 142
Unit IDs
9VTH|1|10|G|170
9VTH|1|10|U|171
9VTH|1|10|U|172
9VTH|1|10|C|173
9VTH|1|10|G|174
9VTH|1|10|A|175
9VTH|1|10|A|176
9VTH|1|10|U|177
9VTH|1|10|C|178
Current chains
- Chain 10
- RNA (204-MER)
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Ribosomal protein
Coloring options: