9VTH Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9VTH_006 | 1/11/7:17 | No text annotation | homologous HL_9PN5_077 HL_73535.4 | |
| HL_9VTH_007 | 1/11/70:82 | No text annotation | homologous HL_9H3G_080 NA | |
| HL_9VTH_008 | 1/11/152:158 | No text annotation | homologous HL_9H3G_081 HL_34789.7 | |
| HL_9VTH_010 | 1/11/246:253 | No text annotation | homologous HL_9H3G_083 HL_67772.4 | |
| HL_9VTH_011 | 1/11/334:342 | No text annotation | homologous HL_9PN5_084 HL_87268.5 | |
| HL_9VTH_012 | 1/11/372:377 | No text annotation | homologous HL_9PN5_085 HL_34789.7 | |
| HL_9VTH_013 | 1/11/397:408 | No text annotation | homologous HL_9PN5_086 HL_86432.4 | |
| HL_9VTH_014 | 1/11/418:423 | No text annotation | homologous HL_9H3G_087 HL_61337.7 | |
| HL_9VTH_015 | 1/11/454:460 | No text annotation | homologous HL_9PN5_088 HL_25795.2 | |
| HL_9VTH_016 | 1/11/523:535 | No text annotation | homologous HL_9H3G_089 HL_68749.4 | |
| HL_9VTH_017 | 1/11/572:577 | No text annotation | homologous HL_9PN5_091 HL_34789.7 | |
| HL_9VTH_018 | 1/11/768:776 | No text annotation | homologous HL_9H3G_091 HL_11974.5 | |
| HL_9VTH_019 | 1/11/781:786 | No text annotation | homologous HL_9H3G_092 HL_34080.1 | |
| HL_9VTH_020 | 1/11/903:912 | No text annotation | homologous HL_9H3G_093 HL_38491.5 | |
| HL_9VTH_021 | 1/11/940:945 | No text annotation | homologous HL_9PN5_096 HL_34789.7 | |
| HL_9VTH_022 | 1/11/1000:1010 | No text annotation | homologous HL_9H3G_095 HL_38491.5 | |
| HL_9VTH_023 | 1/11/1087:1092 | No text annotation | homologous HL_9H3G_097 HL_34789.7 | |
| HL_9VTH_024 | 1/11/1124:1129 | No text annotation | homologous HL_9PN5_100 HL_34789.7 | |
| HL_9VTH_025 | 1/11/1191:1200 | No text annotation | homologous HL_9PN5_101 HL_97521.4 | |
| HL_9VTH_026 | 1/11/1241:1250 | No text annotation | homologous HL_9H3G_100 HL_98423.6 | |
| HL_9VTH_027 | 1/11/1299:1304 | No text annotation | homologous HL_9H3G_101 HL_34789.7 | |
| HL_9VTH_028 | 1/11/1312:1319 | No text annotation | homologous HL_9H3G_102 HL_63894.5 | |
| HL_9VTH_029 | 1/11/1363:1368 | No text annotation | homologous HL_9H3G_103 HL_33487.2 | |
| HL_9VTH_030 | 1/11/1401:1407 | No text annotation | homologous HL_9H3G_104 HL_34789.7 | |
| HL_9VTH_031 | 1/11/1508:1513 | No text annotation | homologous HL_9H3G_105 HL_34789.7 | |
| HL_9VTH_032 | 1/11/1556:1567 | No text annotation | homologous HL_9H3G_106 HL_50951.4 | |
| HL_9VTH_033 | 1/11/1600:1608 | No text annotation | homologous HL_9PN5_109 HL_25307.3 | |
| HL_9VTH_034 | 1/11/1786:1791 | No text annotation | homologous HL_9H3G_108 HL_34789.7 | |
| HL_9VTH_035 | 1/12/32:45 | No text annotation | geometric HL_9E6Q_068 HL_97756.4 | |
| HL_9VTH_036 | 1/12/36:41 | No text annotation | homologous HL_4V9F_071 HL_59381.5 | |
| HL_9VTH_037 | 1/12/86:91 | GNRA | homologous HL_4V9F_072 HL_34789.7 | |
| HL_9VTH_038 | 1/13/50:59 | No text annotation | homologous HL_9H3G_001 HL_17803.4 | |
| HL_9VTH_039 | 1/13/72:92 | No text annotation | homologous HL_9PN5_074 HL_68571.2 | |
| HL_9VTH_040 | 1/13/111:117 | No text annotation | homologous HL_9H3G_003 HL_23875.2 | |
| HL_9VTH_042 | 1/14/36:43 | No text annotation | homologous HL_9PN5_001 HL_02262.2 | |
| HL_9VTH_043 | 1/14/67:72 | No text annotation | homologous HL_9PN5_002 HL_23875.2 | |
| HL_9VTH_044 | 1/14/88:94 | No text annotation | homologous HL_9AXU_003 HL_76371.5 | |
| HL_9VTH_045 | 1/14/130:134 | No text annotation | homologous HL_9H3G_008 HL_90436.6 | |
| HL_9VTH_046 | 1/14/191:198 | No text annotation | homologous HL_9H3G_009 HL_13999.6 | |
| HL_9VTH_047 | 1/14/205:209 | No text annotation | geometric HL_9PN5_006 HL_75660.11 | |
| HL_9VTH_048 | 1/14/213:221 | No text annotation | homologous HL_9H3G_011 HL_27670.7 | |
| HL_9VTH_049 | 1/14/275:284 | No text annotation | homologous HL_9PN5_008 HL_63894.5 | |
| HL_9VTH_050 | 1/14/300:309 | No text annotation | homologous HL_9PN5_009 HL_00911.5 | |
| HL_9VTH_051 | 1/14/354:359 | No text annotation | homologous HL_9H3G_014 HL_34789.7 | |
| HL_9VTH_052 | 1/14/379:384 | No text annotation | homologous HL_9H3G_015 HL_34789.7 | |
| HL_9VTH_053 | 1/14/534:544 | No text annotation | homologous HL_9H3G_017 NA | |
| HL_9VTH_055 | 1/14/598:603 | No text annotation | homologous HL_9H3G_019 HL_61337.7 | |
| HL_9VTH_056 | 1/14/651:660 | No text annotation | homologous HL_9PN5_014 HL_33597.8 | |
| HL_9VTH_057 | 1/14/697:706 | No text annotation | homologous HL_9H3G_021 HL_87268.5 | |
| HL_9VTH_058 | 1/14/720:725 | No text annotation | homologous HL_9H3G_022 HL_34789.7 | |
| HL_9VTH_059 | 1/14/742:747 | No text annotation | geometric HL_8GLP_080 HL_23875.2 | |
| HL_9VTH_060 | 1/14/773:778 | No text annotation | homologous HL_9H3G_024 HL_44506.5 | |
| HL_9VTH_062 | 1/14/886:895 | No text annotation | homologous HL_9PN5_020 HL_50204.4 | |
| HL_9VTH_063 | 1/14/920:928 | No text annotation | homologous HL_9PN5_021 HL_28253.2 | |
| HL_9VTH_064 | 1/14/968:973 | No text annotation | homologous HL_9H3G_028 HL_27530.4 | |
| HL_9VTH_066 | 1/14/1088:1095 | No text annotation | homologous HL_9H3G_030 HL_63894.5 | |
| HL_9VTH_067 | 1/14/1137:1143 | No text annotation | homologous HL_9PN5_024 HL_34789.7 | |
| HL_9VTH_068 | 1/14/1159:1166 | No text annotation | homologous HL_9PN5_025 HL_47171.4 | |
| HL_9VTH_069 | 1/14/1359:1369 | No text annotation | homologous HL_9H3G_033 NA | |
| HL_9VTH_070 | 1/14/1414:1419 | No text annotation | homologous HL_9AXU_027 HL_34789.7 | |
| HL_9VTH_071 | 1/14/1473:1481 | No text annotation | homologous HL_9H3G_035 HL_33597.8 | |
| HL_9VTH_072 | 1/14/1517:1523 | No text annotation | homologous HL_8GLP_034 HL_49081.3 | |
| HL_9VTH_073 | 1/14/1555:1560 | No text annotation | homologous HL_8GLP_035 HL_34789.7 | |
| HL_9VTH_074 | 1/14/1575:1579 | No text annotation | ||
| HL_9VTH_075 | 1/14/1604:1613 | No text annotation | homologous HL_9PN5_034 HL_77449.4 | |
| HL_9VTH_076 | 1/14/1638:1643 | No text annotation | homologous HL_9PN5_035 HL_34789.7 | |
| HL_9VTH_077 | 1/14/1684:1692 | No text annotation | homologous HL_9H3G_041 HL_22758.4 | |
| HL_9VTH_078 | 1/14/1724:1730 | No text annotation | homologous HL_9H3G_042 HL_67772.4 | |
| HL_9VTH_079 | 1/14/1764:1772 | No text annotation | homologous HL_9H3G_043 HL_55735.1 | |
| HL_9VTH_080 | 1/14/1798:1802 | No text annotation | homologous HL_9H3G_044 HL_90436.6 | |
| HL_9VTH_081 | 1/14/1850:1857 | No text annotation | homologous HL_9H3G_045 HL_28592.5 | |
| HL_9VTH_082 | 1/14/1868:1874 | No text annotation | homologous HL_9H3G_046 HL_34789.7 | |
| HL_9VTH_083 | 1/14/1929:1934 | No text annotation | homologous HL_9PN5_042 HL_61337.7 | |
| HL_9VTH_084 | 1/14/2114:2118 | No text annotation | homologous HL_9H3G_048 HL_16651.3 | |
| HL_9VTH_085 | 1/14/2139:2149 | No text annotation | homologous HL_9H3G_049 HL_87681.4 | |
| HL_9VTH_086 | 1/14/2168:2173 | No text annotation | homologous HL_9H3G_050 HL_34789.7 | |
| HL_9VTH_087 | 1/14/2223:2228 | No text annotation | homologous HL_9PN5_046 HL_34789.7 | |
| HL_9VTH_088 | 1/14/2256:2266 | No text annotation | homologous HL_9H3G_052 HL_82185.4 | |
| HL_9VTH_089 | 1/14/2295:2303 | No text annotation | homologous HL_9PN5_048 HL_77449.4 | |
| HL_9VTH_090 | 1/14/2372:2381 | No text annotation | homologous HL_9PN5_049 HL_78372.4 | |
| HL_9VTH_094 | 1/14/2619:2627 | No text annotation | homologous HL_9H3G_055 HL_11974.5 | |
| HL_9VTH_095 | 1/14/2636:2648 | No text annotation | homologous HL_9PN5_053 HL_02042.4 | |
| HL_9VTH_096 | 1/14/2676:2684 | No text annotation | homologous HL_9H3G_057 HL_02452.4 | |
| HL_9VTH_097 | 1/14/2696:2703 | No text annotation | homologous HL_9PN5_055 HL_52651.5 | |
| HL_9VTH_098 | 1/14/2727:2735 | No text annotation | homologous HL_9H3G_059 HL_15296.4 | |
| HL_9VTH_099 | 1/14/2747:2752 | No text annotation | homologous HL_9PN5_057 HL_34789.7 | |
| HL_9VTH_100 | 1/14/2779:2787 | No text annotation | homologous HL_9AXU_056 HL_52651.5 | |
| HL_9VTH_101 | 1/14/2843:2851 | No text annotation | homologous HL_9H3G_062 HL_52011.4 | |
| HL_9VTH_102 | 1/14/2900:2907 | No text annotation | homologous HL_9PN5_060 HL_02262.2 | |
| HL_9VTH_103 | 1/14/2923:2929 | No text annotation | homologous HL_9PN5_061 HL_02262.2 | |
| HL_9VTH_104 | 1/14/2966:2971 | No text annotation | homologous HL_9PN5_062 HL_34789.7 | |
| HL_9VTH_105 | 1/14/3027:3032 | No text annotation | homologous HL_8GLP_070 HL_34789.7 | |
| HL_9VTH_106 | 1/14/3070:3075 | No text annotation | homologous HL_8GLP_071 HL_12125.5 | |
| HL_9VTH_107 | 1/14/3112:3126 | No text annotation | homologous HL_9H3G_068 HL_53269.5 | |
| HL_9VTH_108 | 1/14/3190:3194 | Mini UNCG | geometric HL_5AH5_007 HL_90436.6 | |
| HL_9VTH_109 | 1/14/3233:3240 | No text annotation | homologous HL_9H3G_070 HL_31089.4 | |
| HL_9VTH_110 | 1/14/3295:3303 | No text annotation | homologous HL_9PN5_068 HL_37889.4 | |
| HL_9VTH_111 | 1/14/3342:3345 | No text annotation | ||
| HL_9VTH_112 | 1/16/14:22 | No text annotation | homologous HL_4LCK_001 NA | |
| HL_9VTH_113 | 1/16/31:39 | tRNA anticodon loop | homologous HL_9MTS_102 HL_81376.5 | |
| HL_9VTH_114 | 1/16/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1QU2_003 HL_33597.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9VTH_001 | No text annotation | ||
| HL_9VTH_002 | No text annotation | ||
| HL_9VTH_003 | No text annotation | ||
| HL_9VTH_004 | T-loop with 2 stacked bulged bases | ||
| HL_9VTH_005 | No text annotation | ||
| HL_9VTH_009 | No text annotation | ||
| HL_9VTH_041 | No text annotation | ||
| HL_9VTH_054 | No text annotation | ||
| HL_9VTH_061 | No text annotation | ||
| HL_9VTH_065 | GNRA | ||
| HL_9VTH_091 | GNRA | ||
| HL_9VTH_092 | No text annotation | ||
| HL_9VTH_093 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9VTH_003 | 1/11/24:26, 1/11/603:604 | Single bulged C | homologous IL_9H3G_155 IL_05642.6 | |
| IL_9VTH_004 | 1/11/35:37, 1/11/475:477 | Isolated non-canonical cWW pair | geometric IL_8CRE_391 IL_01003.7 | |
| IL_9VTH_005 | 1/11/37:41, 1/11/470:475 | No text annotation | homologous IL_9H3G_157 IL_35092.2 | |
| IL_9VTH_006 | 1/11/42:48, 1/11/435:437 | No text annotation | homologous IL_9PN5_145 IL_88082.5 | |
| IL_9VTH_007 | 1/11/50:52, 1/11/432:433 | Minor groove platform | homologous IL_9H3G_159 IL_26092.1 | |
| IL_9VTH_008 | 1/11/58:63, 1/11/88:90 | No text annotation | homologous IL_9H3G_160 IL_61299.9 | |
| IL_9VTH_009 | 1/11/64:69, 1/11/83:87 | No text annotation | homologous IL_9H3G_161 IL_21667.4 | |
| IL_9VTH_010 | 1/11/110:113, 1/11/306:309 | Tandem non-canonical cWW pairs | homologous IL_9PN5_149 IL_71194.5 | |
| IL_9VTH_011 | 1/11/114:117, 1/11/304:305 | No text annotation | homologous IL_9PN5_150 IL_71421.6 | |
| IL_9VTH_012 | 1/11/118:123, 1/11/299:303 | No text annotation | homologous IL_9H3G_164 IL_31545.4 | |
| IL_9VTH_013 | 1/11/141:147, 1/11/163:170 | No text annotation | homologous IL_9H3G_165 IL_24485.3 | |
| IL_9VTH_014 | 1/11/147:151, 1/11/159:163 | No text annotation | geometric IL_9JA9_001 IL_71154.6 | |
| IL_9VTH_015 | 1/11/184:187, 1/11/193:196 | No text annotation | homologous IL_9H3G_167 NA | |
| IL_9VTH_016 | 1/11/201:202, 1/11/264:266 | Single bulged A | homologous IL_9H3G_168 IL_14190.5 | |
| IL_9VTH_017 | 1/11/202:203, 1/11/262:264 | Single bulged C | homologous IL_9H3G_169 IL_05642.6 | |
| IL_9VTH_018 | 1/11/203:205, 1/11/260:262 | Isolated non-canonical cWW pair | homologous IL_9PN5_155 IL_71625.6 | |
| IL_9VTH_019 | 1/11/268:270, 1/11/292:293 | Single bulged A | homologous IL_9PN5_156 IL_14190.5 | |
| IL_9VTH_020 | 1/11/273:276, 1/11/287:289 | No text annotation | homologous IL_9H3G_172 IL_77718.1 | |
| IL_9VTH_021 | 1/11/315:320, 1/11/352:359 | Kink-turn with non-sequential stacking | homologous IL_9H3G_173 IL_46174.7 | |
| IL_9VTH_022 | 1/11/322:327, 1/11/349:350 | No text annotation | homologous IL_9H3G_174 IL_01372.4 | |
| IL_9VTH_023 | 1/11/367:369, 1/11/380:385 | No text annotation | homologous IL_9H3G_175 IL_93336.4 | |
| IL_9VTH_024 | 1/11/393:395, 1/11/410:412 | Isolated cWH basepair | homologous IL_9PN5_162 IL_10892.5 | |
| IL_9VTH_025 | 1/11/415:417, 1/11/424:426 | Isolated non-canonical cWW pair | homologous IL_9PN5_163 IL_19025.1 | |
| IL_9VTH_026 | 1/11/443:445, 1/11/467:468 | Single bulged U | homologous IL_9PN5_164 IL_97561.8 | |
| IL_9VTH_027 | 1/11/447:451, 1/11/464:465 | No text annotation | homologous IL_9H3G_179 IL_26900.4 | |
| IL_9VTH_028 | 1/11/451:452, 1/11/462:464 | Single bulged G | homologous IL_9PN5_166 IL_28408.5 | |
| IL_9VTH_029 | 1/11/485:486, 1/11/508:510 | Single bulged A | homologous IL_9H3G_181 IL_14190.5 | |
| IL_9VTH_030 | 1/11/517:519, 1/11/539:546 | No text annotation | homologous IL_9H3G_182 IL_02511.3 | |
| IL_9VTH_031 | 1/11/520:521, 1/11/536:538 | Minor groove platform | homologous IL_9PN5_169 IL_26092.1 | |
| IL_9VTH_032 | 1/11/521:523, 1/11/535:536 | Minor groove platform | homologous IL_9H3G_184 IL_26092.1 | |
| IL_9VTH_033 | 1/11/553:560, 1/11/590:591 | No text annotation | homologous IL_9PN5_171 IL_11411.4 | |
| IL_9VTH_034 | 1/11/560:562, 1/11/589:590 | Single bulged U | homologous IL_9H3G_186 IL_97561.8 | |
| IL_9VTH_035 | 1/11/565:571, 1/11/578:586 | Kink-turn related | homologous IL_9PN5_173 IL_52042.4 | |
| IL_9VTH_036 | 1/11/617:619, 1/11/1108:1110 | Isolated non-canonical cWW pair | homologous IL_9H3G_188 IL_19025.1 | |
| IL_9VTH_037 | 1/11/619:625, 1/11/1107:1108 | No text annotation | homologous IL_9H3G_189 IL_20847.4 | |
| IL_9VTH_038 | 1/11/627:629, 1/11/976:978 | Isolated non-canonical cWW pair | homologous IL_9PN5_175 IL_01003.7 | |
| IL_9VTH_039 | 1/11/630:634, 1/11/971:975 | No text annotation | homologous IL_9PN5_176 IL_05821.4 | |
| IL_9VTH_040 | 1/11/750:751, 1/11/806:809 | No text annotation | homologous IL_9PN5_178 IL_73108.5 | |
| IL_9VTH_041 | 1/11/752:754, 1/11/803:805 | Isolated non-canonical cWW pair | homologous IL_9PN5_179 IL_71625.6 | |
| IL_9VTH_042 | 1/11/755:763, 1/11/795:802 | No text annotation | homologous IL_9H3G_194 IL_59049.5 | |
| IL_9VTH_045 | 1/11/868:869, 1/11/965:968 | Major groove platform; stack outside cWW | geometric IL_9PN5_182 IL_74641.5 | |
| IL_9VTH_046 | 1/11/871:873, 1/11/960:963 | Isolated non-canonical cWW pair | homologous IL_9PN5_183 IL_01003.7 | |
| IL_9VTH_047 | 1/11/874:877, 1/11/956:959 | Tandem non-canonical cWW pairs | homologous IL_9H3G_199 IL_15225.5 | |
| IL_9VTH_048 | 1/11/877:881, 1/11/953:956 | Tandem non-canonical cWW pairs | homologous IL_9PN5_185 IL_15225.5 | |
| IL_9VTH_049 | 1/11/888:891, 1/11/927:930 | Tandem non-canonical cWW pairs | homologous IL_9PN5_186 IL_15225.5 | |
| IL_9VTH_050 | 1/11/898:902, 1/11/913:920 | Kink-turn | homologous IL_9H3G_202 IL_71972.2 | |
| IL_9VTH_051 | 1/11/988:993, 1/11/1017:1019 | No text annotation | homologous IL_9PN5_189 IL_31690.2 | |
| IL_9VTH_052 | 1/11/993:997, 1/11/1013:1017 | No text annotation | homologous IL_9H3G_204 IL_05821.4 | |
| IL_9VTH_053 | 1/11/1037:1039, 1/11/1098:1104 | No text annotation | homologous IL_9H3G_205 IL_82706.5 | |
| IL_9VTH_054 | 1/11/1044:1047, 1/11/1077:1080 | Tandem non-canonical cWW pairs | homologous IL_9PN5_192 IL_15225.5 | |
| IL_9VTH_055 | 1/11/1054:1056, 1/11/1069:1070 | Single stack bend | homologous IL_9H3G_207 IL_15011.6 | |
| IL_9VTH_056 | 1/11/1058:1060, 1/11/1066:1067 | Single bulged G | homologous IL_9H3G_208 IL_28408.5 | |
| IL_9VTH_057 | 1/11/1114:1121, 1/11/1132:1137 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_9PN5_194 IL_84044.4 | |
| IL_9VTH_058 | 1/11/1149:1150, 1/11/1636:1638 | Single bulged A | homologous IL_9PN5_195 IL_14190.5 | |
| IL_9VTH_059 | 1/11/1152:1154, 1/11/1633:1634 | Single bulged G | homologous IL_9H3G_211 IL_28408.5 | |
| IL_9VTH_060 | 1/11/1160:1163, 1/11/1623:1627 | No text annotation | homologous IL_9H3G_212 IL_63596.15 | |
| IL_9VTH_061 | 1/11/1176:1178, 1/11/1469:1471 | Isolated non-canonical cWW pair | homologous IL_9H3G_213 IL_01003.7 | |
| IL_9VTH_062 | 1/11/1181:1182, 1/11/1464:1466 | Minor groove platform | homologous IL_9H3G_214 IL_37129.1 | |
| IL_9VTH_063 | 1/11/1216:1218, 1/11/1453:1455 | Isolated non-canonical cWW pair | homologous IL_9H3G_215 IL_01003.7 | |
| IL_9VTH_066 | 1/11/1271:1273, 1/11/1445:1446 | Single bulged U | homologous IL_9H3G_218 IL_97561.8 | |
| IL_9VTH_067 | 1/11/1275:1279, 1/11/1441:1443 | No text annotation | geometric IL_9PN5_204 IL_82453.4 | |
| IL_9VTH_068 | 1/11/1275:1281, 1/11/1435:1443 | No text annotation | homologous IL_9PN5_206 NA | |
| IL_9VTH_069 | 1/11/1279:1281, 1/11/1435:1441 | No text annotation | homologous IL_9H3G_221 IL_09439.2 | |
| IL_9VTH_070 | 1/11/1283:1284, 1/11/1431:1433 | Single bulged A | homologous IL_9PN5_209 IL_14190.5 | |
| IL_9VTH_071 | 1/11/1293:1295, 1/11/1326:1328 | Isolated cWH basepair | homologous IL_9H3G_223 IL_10892.5 | |
| IL_9VTH_072 | 1/11/1309:1311, 1/11/1320:1321 | Minor groove platform | homologous IL_9H3G_224 IL_37129.1 | |
| IL_9VTH_073 | 1/11/1342:1345, 1/11/1388:1390 | No text annotation | homologous IL_9H3G_225 IL_01003.7 | |
| IL_9VTH_074 | 1/11/1348:1351, 1/11/1382:1385 | No text annotation | homologous IL_9H3G_226 IL_78800.5 | |
| IL_9VTH_075 | 1/11/1354:1356, 1/11/1375:1379 | No text annotation | ||
| IL_9VTH_076 | 1/11/1394:1397, 1/11/1411:1417 | No text annotation | geometric IL_9H3G_228 IL_32376.2 | |
| IL_9VTH_077 | 1/11/1482:1484, 1/11/1534:1536 | Isolated non-canonical cWW pair | homologous IL_9H3G_229 IL_71625.6 | |
| IL_9VTH_078 | 1/11/1484:1492, 1/11/1526:1534 | No text annotation | homologous IL_9H3G_230 NA | |
| IL_9VTH_079 | 1/11/1493:1501, 1/11/1520:1525 | No text annotation | homologous IL_9SUM_213 IL_12629.2 | |
| IL_9VTH_080 | 1/11/1503:1505, 1/11/1516:1518 | No text annotation | homologous IL_9H3G_231 IL_81485.1 | |
| IL_9VTH_081 | 1/11/1546:1551, 1/11/1572:1577 | No text annotation | homologous IL_9PN5_219 IL_28265.2 | |
| IL_9VTH_082 | 1/11/1642:1644, 1/11/1772:1775 | No text annotation | homologous IL_9PN5_220 IL_18228.4 | |
| IL_9VTH_083 | 1/11/1644:1647, 1/11/1768:1772 | No text annotation | homologous IL_9H3G_234 IL_25873.5 | |
| IL_9VTH_084 | 1/11/1648:1650, 1/11/1765:1767 | Isolated non-canonical cWW pair | homologous IL_9PN5_222 IL_01003.7 | |
| IL_9VTH_085 | 1/11/1650:1652, 1/11/1762:1765 | No text annotation | geometric IL_8B0X_009 IL_19025.1 | |
| IL_9VTH_086 | 1/11/1656:1658, 1/11/1756:1758 | Isolated non-canonical cWW pair | homologous IL_9H3G_237 IL_01003.7 | |
| IL_9VTH_087 | 1/11/1659:1662, 1/11/1752:1755 | Double sheared | homologous IL_9PN5_225 IL_58355.5 | |
| IL_9VTH_088 | 1/11/1662:1664, 1/11/1751:1752 | Single bulged U | homologous IL_9PN5_226 IL_97561.8 | |
| IL_9VTH_089 | 1/11/1670:1673, 1/11/1742:1745 | Tandem non-canonical cWW pairs | homologous IL_9H3G_240 IL_71194.5 | |
| IL_9VTH_090 | 1/11/1675:1678, 1/11/1737:1740 | Double sheared | homologous IL_9H3G_241 IL_58355.5 | |
| IL_9VTH_091 | 1/11/1681:1684, 1/11/1731:1734 | Tandem non-canonical cWW pairs | homologous IL_9H3G_242 IL_71194.5 | |
| IL_9VTH_092 | 1/11/1684:1688, 1/11/1727:1731 | No text annotation | homologous IL_9H3G_243 IL_15190.5 | |
| IL_9VTH_093 | 1/12/15:16, 1/12/62:64 | Single bulged U | geometric IL_9H3G_147 IL_97561.8 | |
| IL_9VTH_094 | 1/12/20:27, 1/12/52:58 | No text annotation | geometric IL_9H3G_148 IL_01750.1 | |
| IL_9VTH_095 | 1/12/28:29, 1/12/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.5 | |
| IL_9VTH_096 | 1/12/32:36, 1/12/41:45 | Symmetric double minor groove platform | homologous IL_4V9F_104 IL_58103.15 | |
| IL_9VTH_097 | 1/12/70:78, 1/12/98:105 | No text annotation | homologous IL_9H3G_151 NA | |
| IL_9VTH_098 | 1/12/82:85, 1/12/92:94 | Isolated non-canonical cWW pair | geometric IL_9PN5_139 IL_01003.7 | |
| IL_9VTH_099 | 1/13/16:22, 1/14/401:407 | No text annotation | homologous IL_9H3G_001 IL_22311.4 | |
| IL_9VTH_100 | 1/13/28:29, 1/14/334:336 | Single bulged A | homologous IL_9H3G_002 IL_14190.5 | |
| IL_9VTH_101 | 1/13/67:68, 1/13/97:99 | Single bulged G | homologous IL_9H3G_003 IL_28408.5 | |
| IL_9VTH_102 | 1/13/71:72, 1/13/92:94 | Single bulged U | homologous IL_9PN5_141 IL_97561.8 | |
| IL_9VTH_103 | 1/13/122:126, 1/13/135:139 | No text annotation | homologous IL_9H3G_004 IL_87767.5 | |
| IL_9VTH_104 | 1/13/149:150, 1/14/11:13 | Single bulged U | homologous IL_9H3G_005 IL_97561.8 | |
| IL_9VTH_105 | 1/13/155:157, 1/14/5:6 | Single bulged U | homologous IL_9H3G_006 IL_97561.8 | |
| IL_9VTH_106 | 1/13/159:161, 1/14/1:3 | Isolated non-canonical cWW pair | homologous IL_9H3G_007 IL_01003.7 | |
| IL_9VTH_107 | 1/14/25:26, 1/14/54:56 | Single stack bend | homologous IL_9PN5_003 IL_15011.6 | |
| IL_9VTH_108 | 1/14/29:36, 1/14/43:51 | tSH-tHW-tHH-tHS | homologous IL_9PN5_004 IL_93502.4 | |
| IL_9VTH_109 | 1/14/80:88, 1/14/94:101 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_9H3G_010 IL_93502.4 | |
| IL_9VTH_110 | 1/14/121:122, 1/14/142:147 | No text annotation | homologous IL_9H3G_011 IL_10396.4 | |
| IL_9VTH_111 | 1/14/157:158, 1/14/257:259 | Single bulged G | homologous IL_9H3G_012 IL_28408.5 | |
| IL_9VTH_112 | 1/14/162:164, 1/14/252:253 | Major groove platform | homologous IL_9H3G_013 IL_48076.11 | |
| IL_9VTH_113 | 1/14/166:168, 1/14/244:250 | No text annotation | homologous IL_9H3G_014 NA | |
| IL_9VTH_114 | 1/14/174:176, 1/14/234:238 | No text annotation | homologous IL_9H3G_015 IL_70784.2 | |
| IL_9VTH_115 | 1/14/181:183, 1/14/227:229 | Isolated non-canonical cWW pair | geometric IL_8OI5_023 IL_01003.7 | |
| IL_9VTH_116 | 1/14/186:188, 1/14/201:202 | Single bulged U | homologous IL_9PN5_011 IL_97561.8 | |
| IL_9VTH_117 | 1/14/373:376, 1/14/387:400 | No text annotation | homologous IL_9H3G_017 IL_44923.4 | |
| IL_9VTH_118 | 1/14/430:431, 1/14/635:637 | Single bulged U | homologous IL_9H3G_018 IL_97561.8 | |
| IL_9VTH_119 | 1/14/433:436, 1/14/632:633 | No text annotation | homologous IL_9H3G_019 IL_77710.2 | |
| IL_9VTH_120 | 1/14/498:500, 1/14/626:628 | Isolated non-canonical cWW pair | homologous IL_9H3G_023 IL_01003.7 | |
| IL_9VTH_121 | 1/14/522:528, 1/14/551:555 | No text annotation | homologous IL_9H3G_024 IL_07936.1 | |
| IL_9VTH_122 | 1/14/529:530, 1/14/548:550 | Single bulged U | homologous IL_9H3G_025 IL_97561.8 | |
| IL_9VTH_123 | 1/14/595:597, 1/14/604:607 | Isolated non-canonical cWW pair | homologous IL_9H3G_026 IL_71625.6 | |
| IL_9VTH_124 | 1/14/679:681, 1/14/802:804 | Isolated non-canonical cWW pair | homologous IL_9H3G_027 IL_01003.7 | |
| IL_9VTH_125 | 1/14/691:695, 1/14/708:713 | No text annotation | ||
| IL_9VTH_126 | 1/14/735:739, 1/14/750:755 | No text annotation | homologous IL_9H3G_029 IL_47352.3 | |
| IL_9VTH_127 | 1/14/762:763, 1/14/789:791 | Single bulged A | homologous IL_9H3G_030 IL_14190.5 | |
| IL_9VTH_128 | 1/14/765:766, 1/14/785:787 | Single bulged U | homologous IL_9PN5_024 IL_97561.8 | |
| IL_9VTH_129 | 1/14/767:773, 1/14/778:784 | No text annotation | ||
| IL_9VTH_130 | 1/14/813:815, 1/14/948:950 | Isolated non-canonical cWW pair | homologous IL_9PN5_026 IL_01003.7 | |
| IL_9VTH_131 | 1/14/815:819, 1/14/941:948 | No text annotation | homologous IL_9PN5_027 IL_73855.4 | |
| IL_9VTH_132 | 1/14/838:839, 1/14/905:907 | Single bulged A | homologous IL_9PN5_028 IL_14190.5 | |
| IL_9VTH_133 | 1/14/843:844, 1/14/869:871 | Single bulged G | homologous IL_9PN5_029 IL_28408.5 | |
| IL_9VTH_134 | 1/14/844:848, 1/14/865:869 | No text annotation | homologous IL_9PN5_030 IL_15190.5 | |
| IL_9VTH_135 | 1/14/879:882, 1/14/898:900 | No text annotation | homologous IL_9H3G_037 IL_36931.5 | |
| IL_9VTH_136 | 1/14/883:885, 1/14/896:897 | Single bulged U | homologous IL_9AXU_031 IL_97561.8 | |
| IL_9VTH_137 | 1/14/917:919, 1/14/929:933 | No text annotation | homologous IL_9PN5_033 IL_89509.4 | |
| IL_9VTH_138 | 1/14/964:966, 1/14/975:977 | Isolated non-canonical cWW pair | homologous IL_9H3G_040 IL_71625.6 | |
| IL_9VTH_139 | 1/14/979:980, 1/14/1122:1124 | Single stack bend | homologous IL_9PN5_034 IL_15011.6 | |
| IL_9VTH_140 | 1/14/987:994, 1/14/1112:1115 | No text annotation | homologous IL_9H3G_042 NA | |
| IL_9VTH_141 | 1/14/995:997, 1/14/1110:1111 | Single bulged G | homologous IL_9AXU_036 IL_28408.5 | |
| IL_9VTH_142 | 1/14/1003:1009, 1/14/1064:1070 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_9H3G_044 IL_94128.4 | |
| IL_9VTH_143 | 1/14/1009:1010, 1/14/1062:1064 | Minor groove platform | homologous IL_9PN5_038 IL_37129.1 | |
| IL_9VTH_144 | 1/14/1011:1016, 1/14/1058:1061 | No text annotation | homologous IL_9AXU_039 IL_16301.4 | |
| IL_9VTH_145 | 1/14/1018:1021, 1/14/1053:1056 | Tandem non-canonical cWW pairs | homologous IL_9H3G_047 IL_71194.5 | |
| IL_9VTH_146 | 1/14/1021:1023, 1/14/1051:1053 | Isolated non-canonical cWW pair | homologous IL_9PN5_041 IL_01003.7 | |
| IL_9VTH_147 | 1/14/1025:1030, 1/14/1046:1049 | No text annotation | homologous IL_9H3G_049 IL_74852.2 | |
| IL_9VTH_148 | 1/14/1086:1088, 1/14/1095:1096 | Single bulged G | homologous IL_9AXU_043 IL_28408.5 | |
| IL_9VTH_149 | 1/14/1131:1133, 1/14/1147:1149 | Isolated non-canonical cWW pair | homologous IL_9H3G_052 IL_01003.7 | |
| IL_9VTH_151 | 1/14/1178:1182, 1/14/1340:1344 | UAA/GAN | homologous IL_9H3G_054 IL_08938.4 | |
| IL_9VTH_152 | 1/14/1184:1191, 1/14/1337:1338 | No text annotation | homologous IL_9H3G_055 IL_11411.4 | |
| IL_9VTH_153 | 1/14/1191:1193, 1/14/1336:1337 | Single bulged U | homologous IL_9H3G_056 IL_97561.8 | |
| IL_9VTH_154 | 1/14/1198:1206, 1/14/1326:1331 | No text annotation | homologous IL_9H3G_057 IL_39054.4 | |
| IL_9VTH_155 | 1/14/1206:1217, 1/14/1311:1326 | No text annotation | homologous IL_9PN5_050 IL_34501.4 | |
| IL_9VTH_156 | 1/14/1219:1221, 1/14/1308:1309 | Single bulged U | homologous IL_8GLP_081 IL_97561.8 | |
| IL_9VTH_157 | 1/14/1226:1228, 1/14/1301:1303 | Isolated non-canonical cWW pair | homologous IL_9H3G_060 IL_01003.7 | |
| IL_9VTH_158 | 1/14/1230:1238, 1/14/1295:1299 | Kink-turn | homologous IL_8GLP_082 IL_99692.4 | |
| IL_9VTH_159 | 1/14/1388:1390, 1/14/1439:1442 | No text annotation | homologous IL_9H3G_061 IL_84227.2 | |
| IL_9VTH_160 | 1/14/1399:1407, 1/14/1425:1430 | No text annotation | homologous IL_9H3G_062 NA | |
| IL_9VTH_161 | 1/14/1409:1411, 1/14/1422:1423 | Single bulged A | homologous IL_9H3G_063 IL_14190.5 | |
| IL_9VTH_162 | 1/14/1455:1461, 1/14/2357:2362 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_9H3G_064 IL_02666.4 | |
| IL_9VTH_163 | 1/14/1503:1506, 1/14/1841:1842 | Major groove platform; stack outside cWW | geometric IL_9H3G_065 IL_74641.5 | |
| IL_9VTH_164 | 1/14/1512:1516, 1/14/1524:1526 | No text annotation | homologous IL_9H3G_066 IL_03866.1 | |
| IL_9VTH_165 | 1/14/1543:1547, 1/14/1590:1595 | UAA/GAN | homologous IL_9AXU_060 IL_08938.4 | |
| IL_9VTH_166 | 1/14/1548:1549, 1/14/1587:1589 | Single bulged U | homologous IL_9H3G_068 IL_97561.8 | |
| IL_9VTH_167 | 1/14/1551:1552, 1/14/1565:1567 | No text annotation | ||
| IL_9VTH_168 | 1/14/1552:1553, 1/14/1562:1565 | No text annotation | homologous IL_9H3G_070 IL_48076.11 | |
| IL_9VTH_169 | 1/14/1623:1625, 1/14/1831:1832 | Single stack bend | homologous IL_9H3G_071 IL_15011.6 | |
| IL_9VTH_170 | 1/14/1628:1629, 1/14/1826:1828 | No text annotation | homologous IL_9AXU_062 IL_71421.6 | |
| IL_9VTH_171 | 1/14/1632:1635, 1/14/1817:1823 | No text annotation | homologous IL_9H3G_073 NA | |
| IL_9VTH_172 | 1/14/1649:1653, 1/14/1812:1816 | No text annotation | homologous IL_9H3G_074 IL_15190.5 | |
| IL_9VTH_173 | 1/14/1665:1667, 1/14/1792:1794 | Isolated cWH basepair | homologous IL_9H3G_075 IL_10892.5 | |
| IL_9VTH_174 | 1/14/1673:1674, 1/14/1784:1786 | Single bulged C | homologous IL_9H3G_076 IL_05642.6 | |
| IL_9VTH_175 | 1/14/1674:1675, 1/14/1782:1784 | Single stack bend | homologous IL_9H3G_077 IL_15011.6 | |
| IL_9VTH_176 | 1/14/1679:1681, 1/14/1695:1697 | Isolated non-canonical cWW pair | homologous IL_9H3G_078 IL_01003.7 | |
| IL_9VTH_177 | 1/14/1698:1702, 1/14/1752:1757 | No text annotation | homologous IL_9H3G_079 IL_25943.3 | |
| IL_9VTH_178 | 1/14/1706:1707, 1/14/1746:1748 | Single bulged C | homologous IL_9H3G_080 IL_05642.6 | |
| IL_9VTH_179 | 1/14/1707:1712, 1/14/1742:1746 | No text annotation | homologous IL_9H3G_081 IL_27580.1 | |
| IL_9VTH_180 | 1/14/1716:1722, 1/14/1732:1738 | No text annotation | homologous IL_9PN5_071 IL_93476.4 | |
| IL_9VTH_181 | 1/14/1889:1895, 1/14/2349:2352 | No text annotation | homologous IL_9PN5_072 IL_89862.4 | |
| IL_9VTH_182 | 1/14/1901:1903, 1/14/2341:2343 | No text annotation | homologous IL_9H3G_084 IL_10432.4 | |
| IL_9VTH_183 | 1/14/1904:1907, 1/14/2339:2340 | Major groove platform; stack outside cWW | geometric IL_9H3G_085 IL_74641.5 | |
| IL_9VTH_184 | 1/14/1904:1912, 1/14/2336:2340 | No text annotation | geometric IL_9PN5_075 IL_80252.4 | |
| IL_9VTH_185 | 1/14/1907:1912, 1/14/2336:2339 | No text annotation | homologous IL_9PN5_076 IL_28217.4 | |
| IL_9VTH_186 | 1/14/1924:1929, 1/14/1934:1940 | No text annotation | homologous IL_9H3G_088 IL_20700.4 | |
| IL_9VTH_187 | 1/14/1946:1948, 1/14/2110:2112 | Isolated non-canonical cWW pair | homologous IL_8GLP_109 IL_01003.7 | |
| IL_9VTH_188 | 1/14/1953:1954, 1/14/2102:2105 | No text annotation | homologous IL_9PN5_079 IL_18824.4 | |
| IL_9VTH_189 | 1/14/2132:2133, 1/14/2326:2328 | Single bulged A | homologous IL_8GLP_113 IL_14190.5 | |
| IL_9VTH_190 | 1/14/2160:2165, 1/14/2176:2183 | No text annotation | homologous IL_9PN5_081 IL_14684.4 | |
| IL_9VTH_191 | 1/14/2199:2202, 1/14/2248:2249 | No text annotation | homologous IL_8GLP_116 IL_55206.4 | |
| IL_9VTH_192 | 1/14/2203:2204, 1/14/2244:2247 | No text annotation | homologous IL_9PN5_083 IL_71421.6 | |
| IL_9VTH_193 | 1/14/2207:2209, 1/14/2240:2241 | Single bulged U | homologous IL_9H3G_095 IL_97561.8 | |
| IL_9VTH_194 | 1/14/2209:2213, 1/14/2238:2240 | No text annotation | homologous IL_9H3G_096 IL_42776.2 | |
| IL_9VTH_195 | 1/14/2214:2220, 1/14/2231:2237 | No text annotation | homologous IL_9H3G_097 IL_65359.4 | |
| IL_9VTH_196 | 1/14/2279:2280, 1/14/2310:2313 | No text annotation | geometric IL_9PN5_086 IL_24886.5 | |
| IL_9VTH_197 | 1/14/2280:2291, 1/14/2307:2310 | No text annotation | homologous IL_9PN5_087 IL_84014.4 | |
| IL_9VTH_198 | 1/14/2394:2397, 1/14/2989:2991 | No text annotation | homologous IL_9PN5_088 IL_75527.5 | |
| IL_9VTH_199 | 1/14/2399:2401, 1/14/2984:2987 | No text annotation | homologous IL_9PN5_089 IL_80025.4 | |
| IL_9VTH_200 | 1/14/2412:2414, 1/14/2814:2815 | Single bulged U | homologous IL_9H3G_102 IL_97561.8 | |
| IL_9VTH_201 | 1/14/2415:2416, 1/14/2810:2813 | Minor groove platform | homologous IL_9H3G_103 IL_37129.1 | |
| IL_9VTH_202 | 1/14/2426:2428, 1/14/2607:2610 | No text annotation | homologous IL_8GLP_133 IL_87316.5 | |
| IL_9VTH_203 | 1/14/2430:2432, 1/14/2603:2605 | Isolated non-canonical cWW pair | homologous IL_9H3G_105 IL_01003.7 | |
| IL_9VTH_204 | 1/14/2447:2448, 1/14/2506:2508 | Single bulged C | geometric IL_9TKV_001 IL_05642.6 | |
| IL_9VTH_207 | 1/14/2525:2531, 1/14/2587:2590 | No text annotation | homologous IL_9H3G_109 IL_52092.4 | |
| IL_9VTH_208 | 1/14/2536:2538, 1/14/2550:2552 | Isolated non-canonical cWW pair | geometric IL_5VCI_001 IL_81485.1 | |
| IL_9VTH_209 | 1/14/2617:2618, 1/14/2628:2630 | AG tHS outside loop | homologous IL_9H3G_110 IL_14190.5 | |
| IL_9VTH_211 | 1/14/2669:2671, 1/14/2689:2693 | No text annotation | homologous IL_9PN5_095 IL_14250.4 | |
| IL_9VTH_212 | 1/14/2717:2719, 1/14/2743:2744 | Single bulged A | geometric IL_9H3G_113 IL_14190.5 | |
| IL_9VTH_213 | 1/14/2721:2724, 1/14/2738:2741 | Tandem non-canonical cWW pairs with external base triple | homologous IL_9H3G_114 IL_15225.5 | |
| IL_9VTH_214 | 1/14/2773:2776, 1/14/2790:2791 | No text annotation | homologous IL_9H3G_115 IL_57267.1 | |
| IL_9VTH_215 | 1/14/2826:2829, 1/14/2866:2870 | No text annotation | homologous IL_9PN5_098 IL_10004.1 | |
| IL_9VTH_216 | 1/14/2829:2831, 1/14/2865:2866 | No text annotation | homologous IL_9PN5_099 IL_46637.5 | |
| IL_9VTH_217 | 1/14/2831:2833, 1/14/2861:2865 | No text annotation | homologous IL_9H3G_119 IL_36931.5 | |
| IL_9VTH_218 | 1/14/2838:2842, 1/14/2852:2856 | No text annotation | homologous IL_8GLP_145 IL_87767.5 | |
| IL_9VTH_219 | 1/14/2879:2880, 1/14/2952:2954 | No text annotation | homologous IL_9PN5_102 IL_46637.5 | |
| IL_9VTH_220 | 1/14/2882:2884, 1/14/2946:2950 | No text annotation | homologous IL_9PN5_103 IL_30722.2 | |
| IL_9VTH_221 | 1/14/2884:2885, 1/14/2943:2946 | No text annotation | homologous IL_9PN5_104 IL_44609.5 | |
| IL_9VTH_222 | 1/14/2894:2896, 1/14/2911:2915 | No text annotation | homologous IL_9H3G_124 IL_09353.2 | |
| IL_9VTH_223 | 1/14/2921:2923, 1/14/2929:2931 | Isolated non-canonical cWW pair | homologous IL_9PN5_108 IL_01003.7 | |
| IL_9VTH_224 | 1/14/2963:2964, 1/14/2973:2975 | Single bulged A | homologous IL_9PN5_109 IL_14190.5 | |
| IL_9VTH_225 | 1/14/3006:3009, 1/14/3141:3145 | Double sheared | homologous IL_9H3G_127 IL_58355.5 | |
| IL_9VTH_226 | 1/14/3014:3016, 1/14/3042:3044 | Isolated non-canonical cWW pair | homologous IL_8GLP_316 IL_71625.6 | |
| IL_9VTH_227 | 1/14/3020:3027, 1/14/3032:3038 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_9H3G_129 IL_34443.2 | |
| IL_9VTH_228 | 1/14/3049:3053, 1/14/3093:3096 | No text annotation | homologous IL_9PN5_113 IL_06671.4 | |
| IL_9VTH_229 | 1/14/3056:3061, 1/14/3086:3090 | No text annotation | homologous IL_9H3G_131 IL_43276.1 | |
| IL_9VTH_230 | 1/14/3065:3066, 1/14/3079:3082 | No text annotation | homologous IL_9H3G_132 IL_44609.5 | |
| IL_9VTH_231 | 1/14/3105:3109, 1/14/3129:3133 | UAA/GAN | homologous IL_9H3G_133 IL_08938.4 | |
| IL_9VTH_232 | 1/14/3164:3166, 1/14/3274:3276 | Isolated non-canonical cWW pair | homologous IL_9PN5_118 IL_71625.6 | |
| IL_9VTH_233 | 1/14/3174:3176, 1/14/3205:3206 | Single bulged A | homologous IL_9H3G_135 IL_14190.5 | |
| IL_9VTH_234 | 1/14/3177:3185, 1/14/3199:3204 | No text annotation | homologous IL_9H3G_136 NA | |
| IL_9VTH_235 | 1/14/3219:3223, 1/14/3250:3252 | No text annotation | geometric IL_2OEU_001 IL_24466.1 | |
| IL_9VTH_236 | 1/14/3292:3295, 1/14/3303:3306 | Tandem non-canonical cWW pairs | homologous IL_9H3G_140 IL_71194.5 | |
| IL_9VTH_237 | 1/14/3310:3312, 1/14/3380:3381 | Single bulged U | homologous IL_9PN5_126 IL_97561.8 | |
| IL_9VTH_238 | 1/14/3316:3317, 1/14/3373:3376 | Minor groove platform | homologous IL_9H3G_142 IL_26092.1 | |
| IL_9VTH_239 | 1/14/3320:3322, 1/14/3365:3370 | No text annotation | homologous IL_9PN5_128 IL_00086.4 | |
| IL_9VTH_240 | 1/14/3324:3329, 1/14/3359:3363 | No text annotation | homologous IL_9PN5_129 IL_48489.4 | |
| IL_9VTH_241 | 1/14/3332:3334, 1/14/3355:3356 | Single bulged C | homologous IL_8GLP_178 IL_05642.6 | |
| IL_9VTH_242 | 1/14/3334:3337, 1/14/3352:3355 | Double sheared | homologous IL_8GLP_179 IL_58355.5 | |
| IL_9VTH_243 | 1/14/3341:3342, 1/14/3345:3348 | No text annotation | homologous IL_9PN5_132 IL_09092.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9VTH_001 | No text annotation | ||
| IL_9VTH_002 | No text annotation | ||
| IL_9VTH_043 | No text annotation | ||
| IL_9VTH_044 | No text annotation | ||
| IL_9VTH_064 | No text annotation | ||
| IL_9VTH_065 | No text annotation | ||
| IL_9VTH_150 | No text annotation | ||
| IL_9VTH_205 | No text annotation | ||
| IL_9VTH_206 | No text annotation | ||
| IL_9VTH_210 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9VTH_001 | 1/11/41:42, 1/11/437:443, 1/11/468:470 | No text annotation | homologous J3_9PN5_027 J3_58657.4 | |
| J3_9VTH_002 | 1/11/636:639, 1/11/863:868, 1/11/968:969 | No text annotation | ||
| J3_9VTH_003 | 1/11/636:639, 1/11/863:869, 1/11/965:969 | No text annotation | ||
| J3_9VTH_004 | 1/11/764:767, 1/11/777:779, 1/11/788:794 | No text annotation | homologous J3_9H3G_032 J3_97642.5 | |
| J3_9VTH_005 | 1/11/884:887, 1/11/931:939, 1/11/946:950 | No text annotation | homologous J3_9H3G_033 NA | |
| J3_9VTH_006 | 1/11/1040:1042, 1/11/1082:1086, 1/11/1093:1097 | No text annotation | homologous J3_9PN5_034 NA | |
| J3_9VTH_007 | 1/11/1164:1167, 1/11/1587:1593, 1/11/1615:1622 | No text annotation | homologous J3_9H3G_035 J3_85722.4 | |
| J3_9VTH_008 | 1/11/1171:1174, 1/11/1473:1475, 1/11/1580:1583 | No text annotation | homologous J3_9PN5_036 J3_44359.4 | |
| J3_9VTH_009 | 1/11/1183:1190, 1/11/1201:1212, 1/11/1459:1463 | No text annotation | homologous J3_9PN5_037 J3_88451.4 | |
| J3_9VTH_010 | 1/11/1218:1223, 1/11/1266:1270, 1/11/1447:1453 | No text annotation | homologous J3_9H3G_038 J3_87797.4 | |
| J3_9VTH_011 | 1/11/1286:1291, 1/11/1330:1335, 1/11/1424:1429 | No text annotation | homologous J3_9H3G_039 NA | |
| J3_9VTH_012 | 1/11/1296:1297, 1/11/1306:1309, 1/11/1321:1325 | No text annotation | homologous J3_9PN5_040 J3_76043.7 | |
| J3_9VTH_013 | 1/11/1339:1341, 1/11/1391:1394, 1/11/1417:1420 | No text annotation | geometric J3_9H3G_041 J3_82365.8 | |
| J3_9VTH_014 | 1/11/1339:1341, 1/11/1391:1397, 1/11/1411:1420 | No text annotation | homologous J3_9H3G_042 J3_40706.2 | |
| J3_9VTH_015 | 1/11/1475:1479, 1/11/1539:1546, 1/11/1577:1580 | No text annotation | homologous J3_9PN5_043 J3_03192.4 | |
| J3_9VTH_016 | 1/12/9:14, 1/12/65:66, 1/12/109:110 | No text annotation | geometric J3_9AXU_026 J3_26985.4 | |
| J3_9VTH_017 | 1/13/22:23, 1/14/366:373, 1/14/400:401 | No text annotation | geometric J3_9E6Q_001 J3_68715.4 | |
| J3_9VTH_018 | 1/13/22:23, 1/14/366:376, 1/14/387:401 | No text annotation | homologous J3_9H3G_002 J3_17917.4 | |
| J3_9VTH_019 | 1/13/24:27, 1/14/337:353, 1/14/360:365 | No text annotation | homologous J3_9H3G_003 J3_07616.4 | |
| J3_9VTH_020 | 1/13/47:48, 1/13/61:67, 1/13/99:103 | No text annotation | homologous J3_9H3G_004 J3_01004.4 | |
| J3_9VTH_021 | 1/14/111:121, 1/14/147:156, 1/14/260:264 | No text annotation | homologous J3_9H3G_005 J3_69230.4 | |
| J3_9VTH_022 | 1/14/111:122, 1/14/142:156, 1/14/260:264 | No text annotation | ||
| J3_9VTH_023 | 1/14/183:186, 1/14/202:211, 1/14/223:227 | No text annotation | ||
| J3_9VTH_024 | 1/14/506:508, 1/14/569:579, 1/14/615:620 | No text annotation | homologous J3_9H3G_010 NA | |
| J3_9VTH_025 | 1/14/585:586, 1/14/594:595, 1/14/607:609 | No text annotation | homologous J3_9H3G_011 NA | |
| J3_9VTH_026 | 1/14/824:830, 1/14/915:917, 1/14/933:936 | No text annotation | homologous J3_9PN5_008 J3_46658.4 | |
| J3_9VTH_027 | 1/14/839:841, 1/14/873:877, 1/14/902:905 | No text annotation | homologous J3_9H3G_013 J3_69816.4 | |
| J3_9VTH_028 | 1/14/998:999, 1/14/1074:1078, 1/14/1104:1109 | No text annotation | homologous J3_9H3G_014 NA | |
| J3_9VTH_029 | 1/14/1490:1496, 1/14/1863:1865, 1/14/1877:1880 | No text annotation | homologous J3_9PN5_012 J3_05025.4 | |
| J3_9VTH_030 | 1/14/1499:1502, 1/14/1843:1849, 1/14/1858:1860 | No text annotation | homologous J3_9H3G_016 J3_76012.4 | |
| J3_9VTH_031 | 1/14/1537:1542, 1/14/1596:1600, 1/14/1617:1618 | No text annotation | homologous J3_9H3G_017 J3_94309.4 | |
| J3_9VTH_032 | 1/14/1549:1551, 1/14/1567:1571, 1/14/1583:1587 | No text annotation | homologous J3_9H3G_018 NA | |
| J3_9VTH_033 | 1/14/1635:1636, 1/14/1645:1649, 1/14/1816:1817 | No text annotation | homologous J3_9H3G_019 J3_05348.4 | |
| J3_9VTH_034 | 1/14/1658:1662, 1/14/1797:1798, 1/14/1802:1807 | No text annotation | homologous J3_9AXU_018 J3_08594.4 | |
| J3_9VTH_035 | 1/14/2434:2438, 1/14/2517:2521, 1/14/2594:2601 | No text annotation | homologous J3_9H3G_021 NA | |
| J3_9VTH_036 | 1/14/2534:2536, 1/14/2552:2566, 1/14/2581:2584 | No text annotation | ||
| J3_9VTH_037 | 1/14/2654:2656, 1/14/2757:2768, 1/14/2796:2801 | No text annotation | homologous J3_9PN5_020 J3_04772.4 | |
| J3_9VTH_038 | 1/14/2667:2669, 1/14/2693:2695, 1/14/2704:2709 | No text annotation | homologous J3_9PN5_021 J3_05327.4 | |
| J3_9VTH_039 | 1/14/2889:2892, 1/14/2917:2919, 1/14/2933:2939 | No text annotation | homologous J3_9H3G_024 J3_44047.4 | |
| J3_9VTH_040 | 1/14/3167:3174, 1/14/3206:3217, 1/14/3254:3273 | No text annotation | ||
| J3_9VTH_041 | 1/14/3290:3292, 1/14/3306:3310, 1/14/3381:3384 | No text annotation | homologous J3_9AXU_025 NA | |
| J4_9VTH_001 | 1/11/100:108, 1/11/311:313, 1/11/361:365, 1/11/387:388 | No text annotation | homologous J4_9H3G_013 J4_15241.5 | |
| J4_9VTH_002 | 1/11/625:627, 1/11/978:983, 1/11/1024:1035, 1/11/1106:1107 | No text annotation | homologous J4_9PN5_011 J4_14595.4 | |
| J4_9VTH_003 | 1/14/110:111, 1/14/264:269, 1/14/290:296, 1/14/313:316 | No text annotation | homologous J4_9H3G_001 J4_94698.4 | |
| J4_9VTH_004 | 1/14/183:186, 1/14/202:205, 1/14/209:211, 1/14/223:227 | No text annotation | ||
| J4_9VTH_005 | 1/14/1462:1468, 1/14/1486:1487, 1/14/1883:1886, 1/14/2355:2356 | No text annotation | homologous J4_9H3G_003 J4_19484.2 | |
| J4_9VTH_006 | 1/14/1503:1507, 1/14/1531:1536, 1/14/1619:1620, 1/14/1835:1842 | No text annotation | homologous J4_9H3G_004 J4_77353.2 | |
| J4_9VTH_007 | 1/14/1506:1507, 1/14/1531:1536, 1/14/1619:1620, 1/14/1835:1841 | No text annotation | homologous J4_9H3G_005 J4_48150.2 | |
| J4_9VTH_008 | 1/14/1678:1679, 1/14/1697:1698, 1/14/1757:1758, 1/14/1778:1779 | No text annotation | homologous J4_9H3G_006 J4_75575.3 | |
| J4_9VTH_009 | 1/14/2134:2138, 1/14/2150:2154, 1/14/2189:2193, 1/14/2320:2325 | No text annotation | homologous J4_9PN5_006 J4_78485.4 | |
| J4_9VTH_010 | 1/14/2195:2197, 1/14/2251:2252, 1/14/2270:2279, 1/14/2313:2318 | No text annotation | homologous J4_8GLP_010 J4_21738.2 | |
| J4_9VTH_011 | 1/14/2657:2661, 1/14/2715:2717, 1/14/2744:2745, 1/14/2754:2756 | No text annotation | homologous J4_9SUM_008 NA | |
| J4_9VTH_012 | 1/14/2657:2661, 1/14/2715:2719, 1/14/2743:2745, 1/14/2754:2756 | No text annotation | homologous J4_9H3G_010 J4_59590.4 | |
| J4_9VTH_013 | 1/14/3012:3014, 1/14/3044:3045, 1/14/3100:3102, 1/14/3136:3138 | No text annotation | homologous J4_9H3G_011 J4_37757.4 | |
| J4_9VTH_014 | 1/16/8:11, 1/16/25:27, 1/16/43:49, 1/16/65:66 | tRNA junction | homologous J4_6UFM_001 J4_95067.3 | |
| J5_9VTH_001 | 1/11/31:35, 1/11/477:483, 1/11/512:517, 1/11/546:549, 1/11/595:598 | No text annotation | homologous J5_9H3G_007 J5_04786.3 | |
| J5_9VTH_002 | 1/11/31:35, 1/11/477:483, 1/11/512:519, 1/11/539:549, 1/11/595:598 | No text annotation | ||
| J5_9VTH_003 | 1/11/54:57, 1/11/91:98, 1/11/390:392, 1/11/413:415, 1/11/426:430 | No text annotation | homologous J5_9PN5_009 J5_58574.4 | |
| J5_9VTH_004 | 1/11/127:140, 1/11/171:182, 1/11/198:201, 1/11/266:268, 1/11/293:295 | No text annotation | ||
| J5_9VTH_005 | 1/11/127:140, 1/11/171:182, 1/11/198:201, 1/11/266:270, 1/11/292:295 | No text annotation | ||
| J5_9VTH_006 | 1/13/38:45, 1/13/105:110, 1/13/118:119, 1/13/142:144, 1/14/18:20 | No text annotation | homologous J5_9H3G_001 J5_27223.4 | |
| J5_9VTH_007 | 1/14/669:674, 1/14/809:812, 1/14/951:954, 1/14/1387:1388, 1/14/1442:1448 | No text annotation | homologous J5_9PN5_002 J5_08384.4 | |
| J5_9VTH_008 | 1/14/686:689, 1/14/715:719, 1/14/726:731, 1/14/759:761, 1/14/792:797 | No text annotation | homologous J5_9H3G_003 NA | |
| J5_9VTH_009 | 1/14/1912:1920, 1/14/1944:1945, 1/14/2113:2114, 1/14/2118:2126, 1/14/2334:2336 | No text annotation | homologous J5_9PN5_004 J5_99177.4 | |
| J5_9VTH_010 | 1/14/2402:2409, 1/14/2818:2826, 1/14/2870:2879, 1/14/2954:2960, 1/14/2978:2983 | No text annotation | ||
| J5_9VTH_011 | 1/14/2419:2422, 1/14/2614:2617, 1/14/2630:2631, 1/14/2653:2654, 1/14/2801:2807 | No text annotation | homologous J5_9H3G_006 J5_96125.4 | |
| J6_9VTH_001 | 1/13/35:38, 1/14/20:25, 1/14/56:66, 1/14/73:77, 1/14/104:108, 1/14/318:328 | No text annotation | ||
| J6_9VTH_002 | 1/14/2419:2422, 1/14/2614:2617, 1/14/2630:2631, 1/14/2653:2656, 1/14/2757:2768, 1/14/2796:2807 | No text annotation | ||
| J7_9VTH_001 | 1/14/959:964, 1/14/977:978, 1/14/1125:1128, 1/14/1152:1157, 1/14/1168:1172, 1/14/1350:1351, 1/14/1377:1382 | No text annotation |
Problematic loops
No problematic loops
Coloring options: