HL_9VTH_006
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUUGAUCCUGC
- Length
- 11 nucleotides
- Bulged bases
- 9VTH|1|11|U|9
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9VTH_006 not in the Motif Atlas
- Homologous match to HL_9PN5_077
- Geometric discrepancy: 0.0738
- The information below is about HL_9PN5_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.4
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9VTH|1|11|G|7
9VTH|1|11|U|8
9VTH|1|11|U|9
9VTH|1|11|G|10
9VTH|1|11|A|11
9VTH|1|11|U|12
9VTH|1|11|C|13
9VTH|1|11|C|14
9VTH|1|11|U|15
9VTH|1|11|G|16
9VTH|1|11|C|17
Current chains
- Chain 11
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS5
- Chain SJ
- 40S ribosomal protein S23
Coloring options: