HL_9VTH_008

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9VTH|1|11|U|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_008 not in the Motif Atlas

Homologous match to HL_9H3G_081

Geometric discrepancy: 0.1024

The information below is about HL_9H3G_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

456

Unit IDs

9VTH|1|11|G|152
9VTH|1|11|U|153
9VTH|1|11|A|154
9VTH|1|11|A|155
9VTH|1|11|U|156
9VTH|1|11|U|157
9VTH|1|11|C|158

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SR

40S ribosomal protein S6

Chain SZ

40S ribosomal protein S24