HL_9VTH_010

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9VTH|1|11|U|252

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_010 not in the Motif Atlas

Homologous match to HL_9H3G_083

Geometric discrepancy: 0.1484

The information below is about HL_9H3G_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9VTH|1|11|G|246
9VTH|1|11|A|247
9VTH|1|11|U|248
9VTH|1|11|G|249
9VTH|1|11|A|250
9VTH|1|11|U|251
9VTH|1|11|U|252
9VTH|1|11|C|253

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SN

40S ribosomal protein S11

Chain SQ

40S ribosomal protein S4