HL_9VTH_014

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9VTH|1|11|A|420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9VTH_014 not in the Motif Atlas

Homologous match to HL_9H3G_087

Geometric discrepancy: 0.1744

The information below is about HL_9H3G_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61337.7

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9VTH|1|11|C|418
9VTH|1|11|C|419
9VTH|1|11|A|420
9VTH|1|11|A|421
9VTH|1|11|G|422
9VTH|1|11|G|423

Current chains

Chain 11

18S rRNA

Nearby chains

Chain LH

60S ribosomal protein L23

Chain SR

40S ribosomal protein S6